MANIFEST.in
README.md
pyproject.toml
docs/source/conf.py
mdsa_tools/Analysis.py
mdsa_tools/Convenience.py
mdsa_tools/Cpptraj_import.py
mdsa_tools/Data_gen_hbond.py
mdsa_tools/Viz.py
mdsa_tools/__init__.py
mdsa_tools/msm_modeler.py
mdsa_tools.egg-info/PKG-INFO
mdsa_tools.egg-info/SOURCES.txt
mdsa_tools.egg-info/dependency_links.txt
mdsa_tools.egg-info/requires.txt
mdsa_tools.egg-info/top_level.txt
new_sampling/new_sampling.py
new_sampling/new_sampling_embeddingspace_and_notebook.py
new_sampling/testing_import.py
new_sampling/testing_read.py
supplemental_figures/CGU_MSM_from_substates.py
supplemental_figures/MSM_from_substates.py
supplemental_figures/PCA_Cohesion_visuals.py
supplemental_figures/Substate_ContourPlots.py
supplemental_figures/Substate_cohesion.py
supplemental_figures/Substate_per_replicate_lens.py
supplemental_figures/Substate_replicatemaps.py
supplemental_figures/Substates_identification.py
supplemental_figures/UMAP_worm_clust.py
supplemental_figures/crawl.py
supplemental_figures/substate_figs.py
tests/__init__.py
tests/conftest.py
tests/test_analysis.py
tests/test_cpptraj_import.py
tests/test_data_gen.py
tests/test_visualization.py