LICENSE.md
README.md
pyproject.toml
./mbo_utilities/__init__.py
./mbo_utilities/_parsing.py
./mbo_utilities/_protocols.py
./mbo_utilities/_writers.py
./mbo_utilities/benchmarks.py
./mbo_utilities/cli.py
./mbo_utilities/file_io.py
./mbo_utilities/install.py
./mbo_utilities/log.py
./mbo_utilities/pipeline_registry.py
./mbo_utilities/preferences.py
./mbo_utilities/reader.py
./mbo_utilities/transfer.py
./mbo_utilities/util.py
./mbo_utilities/writer.py
./mbo_utilities/analysis/__init__.py
./mbo_utilities/analysis/_scanphase_dialog.py
./mbo_utilities/analysis/cellpose.py
./mbo_utilities/analysis/metrics.py
./mbo_utilities/analysis/phasecorr.py
./mbo_utilities/analysis/scanphase.py
./mbo_utilities/arrays/__init__.py
./mbo_utilities/arrays/_base.py
./mbo_utilities/arrays/_registration.py
./mbo_utilities/arrays/bin.py
./mbo_utilities/arrays/h5.py
./mbo_utilities/arrays/isoview.py
./mbo_utilities/arrays/numpy.py
./mbo_utilities/arrays/nwb.py
./mbo_utilities/arrays/suite2p.py
./mbo_utilities/arrays/tiff.py
./mbo_utilities/arrays/zarr.py
./mbo_utilities/arrays/features/__init__.py
./mbo_utilities/arrays/features/_base.py
./mbo_utilities/arrays/features/_chunks.py
./mbo_utilities/arrays/features/_compression.py
./mbo_utilities/arrays/features/_dim_labels.py
./mbo_utilities/arrays/features/_display_range.py
./mbo_utilities/arrays/features/_dtype.py
./mbo_utilities/arrays/features/_frame_rate.py
./mbo_utilities/arrays/features/_mixin.py
./mbo_utilities/arrays/features/_phase_correction.py
./mbo_utilities/arrays/features/_registration.py
./mbo_utilities/arrays/features/_roi.py
./mbo_utilities/arrays/features/_segmentation.py
./mbo_utilities/arrays/features/_stats.py
./mbo_utilities/arrays/features/_voxel_size.py
./mbo_utilities/assets/app_settings/icon.ico
./mbo_utilities/assets/app_settings/icon.png
./mbo_utilities/assets/fonts/Akronim-Regular.ttf
./mbo_utilities/assets/fonts/DroidSans.ttf
./mbo_utilities/assets/fonts/Font_Awesome_6_Free-Solid-900.otf
./mbo_utilities/assets/fonts/Inconsolata-Medium.ttf
./mbo_utilities/assets/fonts/SourceCodePro-Regular.ttf
./mbo_utilities/assets/fonts/fontawesome-webfont.ttf
./mbo_utilities/assets/fonts/JetBrainsMono/JetBrainsMonoNerdFont-Bold.ttf
./mbo_utilities/assets/fonts/JetBrainsMono/OFL.txt
./mbo_utilities/assets/fonts/JetBrainsMono/README.md
./mbo_utilities/assets/fonts/Roboto/LICENSE.txt
./mbo_utilities/assets/fonts/Roboto/Roboto-Bold.ttf
./mbo_utilities/assets/fonts/Roboto/Roboto-BoldItalic.ttf
./mbo_utilities/assets/fonts/Roboto/Roboto-Regular.ttf
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./mbo_utilities/assets/static/icon_caiman_python.svg
./mbo_utilities/assets/static/icon_mbo_home.png
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./mbo_utilities/assets/static/icon_suite2p.svg
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./mbo_utilities/assets/static/logo_utilities.png
./mbo_utilities/assets/static/mbo.png
./mbo_utilities/assets/static/mbo_home_icon.png
./mbo_utilities/assets/static/mbo_hub_saph.svg
./mbo_utilities/assets/static/mbo_icon.ico
./mbo_utilities/assets/static/mbo_icon_dark.ico
./mbo_utilities/assets/static/utilities.png
./mbo_utilities/db/__init__.py
./mbo_utilities/db/cli.py
./mbo_utilities/db/database.py
./mbo_utilities/db/gui.py
./mbo_utilities/db/models.py
./mbo_utilities/db/scanner.py
./mbo_utilities/gui/__init__.py
./mbo_utilities/gui/_availability.py
./mbo_utilities/gui/_dialogs.py
./mbo_utilities/gui/_imgui_helpers.py
./mbo_utilities/gui/_keyboard.py
./mbo_utilities/gui/_metadata.py
./mbo_utilities/gui/_pollen_analysis.py
./mbo_utilities/gui/_popups.py
./mbo_utilities/gui/_protocols.py
./mbo_utilities/gui/_save_as.py
./mbo_utilities/gui/_setup.py
./mbo_utilities/gui/_stats.py
./mbo_utilities/gui/_worker.py
./mbo_utilities/gui/feature_registry.py
./mbo_utilities/gui/run_gui.py
./mbo_utilities/gui/tasks.py
./mbo_utilities/gui/panels/__init__.py
./mbo_utilities/gui/panels/debug_log.py
./mbo_utilities/gui/panels/metadata.py
./mbo_utilities/gui/panels/pipeline.py
./mbo_utilities/gui/panels/process_manager.py
./mbo_utilities/gui/panels/stats.py
./mbo_utilities/gui/viewers/__init__.py
./mbo_utilities/gui/viewers/pollen_calibration.py
./mbo_utilities/gui/viewers/time_series.py
./mbo_utilities/gui/widgets/__init__.py
./mbo_utilities/gui/widgets/_base.py
./mbo_utilities/gui/widgets/diagnostics.py
./mbo_utilities/gui/widgets/file_dialog.py
./mbo_utilities/gui/widgets/frame_averaging.py
./mbo_utilities/gui/widgets/grid_search.py
./mbo_utilities/gui/widgets/gui_logger.py
./mbo_utilities/gui/widgets/menu_bar.py
./mbo_utilities/gui/widgets/preview_data.py
./mbo_utilities/gui/widgets/process_manager.py
./mbo_utilities/gui/widgets/progress_bar.py
./mbo_utilities/gui/widgets/raster_scan.py
./mbo_utilities/gui/widgets/simple_selector.py
./mbo_utilities/gui/widgets/suite2p_results.py
./mbo_utilities/gui/widgets/upgrade_manager.py
./mbo_utilities/gui/widgets/window_functions.py
./mbo_utilities/gui/widgets/pipelines/__init__.py
./mbo_utilities/gui/widgets/pipelines/_base.py
./mbo_utilities/gui/widgets/pipelines/settings.py
./mbo_utilities/gui/widgets/pipelines/suite2p.py
./mbo_utilities/metadata/__init__.py
./mbo_utilities/metadata/base.py
./mbo_utilities/metadata/io.py
./mbo_utilities/metadata/params.py
./mbo_utilities/metadata/scanimage.py
./pollen/__init__.py
./pollen/pollen_calibration_mbo.py
mbo_utilities/__init__.py
mbo_utilities/_parsing.py
mbo_utilities/_protocols.py
mbo_utilities/_writers.py
mbo_utilities/benchmarks.py
mbo_utilities/cli.py
mbo_utilities/file_io.py
mbo_utilities/install.py
mbo_utilities/log.py
mbo_utilities/pipeline_registry.py
mbo_utilities/preferences.py
mbo_utilities/reader.py
mbo_utilities/transfer.py
mbo_utilities/util.py
mbo_utilities/writer.py
mbo_utilities.egg-info/PKG-INFO
mbo_utilities.egg-info/SOURCES.txt
mbo_utilities.egg-info/dependency_links.txt
mbo_utilities.egg-info/entry_points.txt
mbo_utilities.egg-info/requires.txt
mbo_utilities.egg-info/top_level.txt
mbo_utilities/analysis/__init__.py
mbo_utilities/analysis/_scanphase_dialog.py
mbo_utilities/analysis/cellpose.py
mbo_utilities/analysis/metrics.py
mbo_utilities/analysis/phasecorr.py
mbo_utilities/analysis/scanphase.py
mbo_utilities/arrays/__init__.py
mbo_utilities/arrays/_base.py
mbo_utilities/arrays/_registration.py
mbo_utilities/arrays/bin.py
mbo_utilities/arrays/h5.py
mbo_utilities/arrays/isoview.py
mbo_utilities/arrays/numpy.py
mbo_utilities/arrays/nwb.py
mbo_utilities/arrays/suite2p.py
mbo_utilities/arrays/tiff.py
mbo_utilities/arrays/zarr.py
mbo_utilities/arrays/features/__init__.py
mbo_utilities/arrays/features/_base.py
mbo_utilities/arrays/features/_chunks.py
mbo_utilities/arrays/features/_compression.py
mbo_utilities/arrays/features/_dim_labels.py
mbo_utilities/arrays/features/_display_range.py
mbo_utilities/arrays/features/_dtype.py
mbo_utilities/arrays/features/_frame_rate.py
mbo_utilities/arrays/features/_mixin.py
mbo_utilities/arrays/features/_phase_correction.py
mbo_utilities/arrays/features/_registration.py
mbo_utilities/arrays/features/_roi.py
mbo_utilities/arrays/features/_segmentation.py
mbo_utilities/arrays/features/_stats.py
mbo_utilities/arrays/features/_voxel_size.py
mbo_utilities/assets/app_settings/icon.ico
mbo_utilities/assets/app_settings/icon.png
mbo_utilities/assets/fonts/Akronim-Regular.ttf
mbo_utilities/assets/fonts/DroidSans.ttf
mbo_utilities/assets/fonts/Font_Awesome_6_Free-Solid-900.otf
mbo_utilities/assets/fonts/Inconsolata-Medium.ttf
mbo_utilities/assets/fonts/SourceCodePro-Regular.ttf
mbo_utilities/assets/fonts/fontawesome-webfont.ttf
mbo_utilities/assets/fonts/JetBrainsMono/JetBrainsMonoNerdFont-Bold.ttf
mbo_utilities/assets/fonts/JetBrainsMono/OFL.txt
mbo_utilities/assets/fonts/JetBrainsMono/README.md
mbo_utilities/assets/fonts/Roboto/LICENSE.txt
mbo_utilities/assets/fonts/Roboto/Roboto-Bold.ttf
mbo_utilities/assets/fonts/Roboto/Roboto-BoldItalic.ttf
mbo_utilities/assets/fonts/Roboto/Roboto-Regular.ttf
mbo_utilities/assets/fonts/Roboto/Roboto-RegularItalic.ttf
mbo_utilities/assets/static/icon_caiman_python.svg
mbo_utilities/assets/static/icon_mbo_home.png
mbo_utilities/assets/static/icon_mbo_home.svg
mbo_utilities/assets/static/icon_suite2p.svg
mbo_utilities/assets/static/lbm_mat_favicon.svg
mbo_utilities/assets/static/logo_utilities.png
mbo_utilities/assets/static/mbo.png
mbo_utilities/assets/static/mbo_home_icon.png
mbo_utilities/assets/static/mbo_hub_saph.svg
mbo_utilities/assets/static/mbo_icon.ico
mbo_utilities/assets/static/mbo_icon_dark.ico
mbo_utilities/assets/static/utilities.png
mbo_utilities/db/__init__.py
mbo_utilities/db/cli.py
mbo_utilities/db/database.py
mbo_utilities/db/gui.py
mbo_utilities/db/models.py
mbo_utilities/db/scanner.py
mbo_utilities/gui/__init__.py
mbo_utilities/gui/_availability.py
mbo_utilities/gui/_dialogs.py
mbo_utilities/gui/_imgui_helpers.py
mbo_utilities/gui/_keyboard.py
mbo_utilities/gui/_metadata.py
mbo_utilities/gui/_pollen_analysis.py
mbo_utilities/gui/_popups.py
mbo_utilities/gui/_protocols.py
mbo_utilities/gui/_save_as.py
mbo_utilities/gui/_setup.py
mbo_utilities/gui/_stats.py
mbo_utilities/gui/_worker.py
mbo_utilities/gui/feature_registry.py
mbo_utilities/gui/run_gui.py
mbo_utilities/gui/tasks.py
mbo_utilities/gui/panels/__init__.py
mbo_utilities/gui/panels/debug_log.py
mbo_utilities/gui/panels/metadata.py
mbo_utilities/gui/panels/pipeline.py
mbo_utilities/gui/panels/process_manager.py
mbo_utilities/gui/panels/stats.py
mbo_utilities/gui/viewers/__init__.py
mbo_utilities/gui/viewers/pollen_calibration.py
mbo_utilities/gui/viewers/time_series.py
mbo_utilities/gui/widgets/__init__.py
mbo_utilities/gui/widgets/_base.py
mbo_utilities/gui/widgets/diagnostics.py
mbo_utilities/gui/widgets/file_dialog.py
mbo_utilities/gui/widgets/frame_averaging.py
mbo_utilities/gui/widgets/grid_search.py
mbo_utilities/gui/widgets/gui_logger.py
mbo_utilities/gui/widgets/menu_bar.py
mbo_utilities/gui/widgets/preview_data.py
mbo_utilities/gui/widgets/process_manager.py
mbo_utilities/gui/widgets/progress_bar.py
mbo_utilities/gui/widgets/raster_scan.py
mbo_utilities/gui/widgets/simple_selector.py
mbo_utilities/gui/widgets/suite2p_results.py
mbo_utilities/gui/widgets/upgrade_manager.py
mbo_utilities/gui/widgets/window_functions.py
mbo_utilities/gui/widgets/pipelines/__init__.py
mbo_utilities/gui/widgets/pipelines/_base.py
mbo_utilities/gui/widgets/pipelines/settings.py
mbo_utilities/gui/widgets/pipelines/suite2p.py
mbo_utilities/metadata/__init__.py
mbo_utilities/metadata/base.py
mbo_utilities/metadata/io.py
mbo_utilities/metadata/params.py
mbo_utilities/metadata/scanimage.py
pollen/__init__.py
pollen/pollen_calibration_mbo.py
tests/test_arrays.py
tests/test_metadata.py
tests/test_metadata_module.py
tests/test_roundtrip.py
tests/test_to_video.py