from ._bulk_signature import generate_arc_sig_df, generate_signature, anova
from ._signature_scoring import (
    signature_scoring,
    subtype_cells,
    permutation_enrichment_test,
)

from ._cell_state_space import (
    read_ref,
    transform_ref_space,
    transform_tumor_space,
    transform_vel,
    phenotyping_recipe,
)
