LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
examples/marker_data.csv
examples/primer_fwd.fasta
examples/primer_rev.fasta
examples/sequence_data/sample10_S10_L001_R1_001.fastq.gz
examples/sequence_data/sample10_S10_L001_R2_001.fastq.gz
examples/sequence_data/sample11_S11_L001_R1_001.fastq.gz
examples/sequence_data/sample11_S11_L001_R2_001.fastq.gz
examples/sequence_data/sample12_S12_L001_R1_001.fastq.gz
examples/sequence_data/sample12_S12_L001_R2_001.fastq.gz
examples/sequence_data/sample13_S13_L001_R1_001.fastq.gz
examples/sequence_data/sample13_S13_L001_R2_001.fastq.gz
examples/sequence_data/sample14_S14_L001_R1_001.fastq.gz
examples/sequence_data/sample14_S14_L001_R2_001.fastq.gz
examples/sequence_data/sample15_S15_L001_R1_001.fastq.gz
examples/sequence_data/sample15_S15_L001_R2_001.fastq.gz
examples/sequence_data/sample16_S16_L001_R1_001.fastq.gz
examples/sequence_data/sample16_S16_L001_R2_001.fastq.gz
examples/sequence_data/sample17_S17_L001_R1_001.fastq.gz
examples/sequence_data/sample17_S17_L001_R2_001.fastq.gz
examples/sequence_data/sample18_S18_L001_R1_001.fastq.gz
examples/sequence_data/sample18_S18_L001_R2_001.fastq.gz
examples/sequence_data/sample19_S19_L001_R1_001.fastq.gz
examples/sequence_data/sample19_S19_L001_R2_001.fastq.gz
examples/sequence_data/sample1_S1_L001_R1_001.fastq.gz
examples/sequence_data/sample1_S1_L001_R2_001.fastq.gz
examples/sequence_data/sample20_S20_L001_R1_001.fastq.gz
examples/sequence_data/sample20_S20_L001_R2_001.fastq.gz
examples/sequence_data/sample2_S2_L001_R1_001.fastq.gz
examples/sequence_data/sample2_S2_L001_R2_001.fastq.gz
examples/sequence_data/sample3_S3_L001_R1_001.fastq.gz
examples/sequence_data/sample3_S3_L001_R2_001.fastq.gz
examples/sequence_data/sample4_S4_L001_R1_001.fastq.gz
examples/sequence_data/sample4_S4_L001_R2_001.fastq.gz
examples/sequence_data/sample5_S5_L001_R1_001.fastq.gz
examples/sequence_data/sample5_S5_L001_R2_001.fastq.gz
examples/sequence_data/sample6_S6_L001_R1_001.fastq.gz
examples/sequence_data/sample6_S6_L001_R2_001.fastq.gz
examples/sequence_data/sample7_S7_L001_R1_001.fastq.gz
examples/sequence_data/sample7_S7_L001_R2_001.fastq.gz
examples/sequence_data/sample8_S8_L001_R1_001.fastq.gz
examples/sequence_data/sample8_S8_L001_R2_001.fastq.gz
examples/sequence_data/sample9_S9_L001_R1_001.fastq.gz
examples/sequence_data/sample9_S9_L001_R2_001.fastq.gz
massgenotyping/__init__.py
massgenotyping/allele_call.py
massgenotyping/allele_check.py
massgenotyping/argument_parser.py
massgenotyping/base.py
massgenotyping/demultiplex.py
massgenotyping/denoise.py
massgenotyping/find_ssrs.py
massgenotyping/merge_pairs.py
massgenotyping/show_alignment.py
massgenotyping/trim_sequence.py
massgenotyping/utils.py
massgenotyping/variant_filter.py
massgenotyping.egg-info/PKG-INFO
massgenotyping.egg-info/SOURCES.txt
massgenotyping.egg-info/dependency_links.txt
massgenotyping.egg-info/entry_points.txt
massgenotyping.egg-info/not-zip-safe
massgenotyping.egg-info/requires.txt
massgenotyping.egg-info/top_level.txt