MANIFEST.in
README.rst
setup.cfg
setup.py
tox.ini
src/__init__.py
src/longbow/__init__.py
src/longbow/__main__.py
src/longbow/meta.py
src/longbow/annotate/__init__.py
src/longbow/annotate/command.py
src/longbow/demultiplex/__init__.py
src/longbow/demultiplex/command.py
src/longbow/extract/__init__.py
src/longbow/extract/command.py
src/longbow/filter/__init__.py
src/longbow/filter/command.py
src/longbow/inspect/__init__.py
src/longbow/inspect/command.py
src/longbow/model/__init__.py
src/longbow/model/command.py
src/longbow/pad/__init__.py
src/longbow/pad/command.py
src/longbow/peek/__init__.py
src/longbow/peek/command.py
src/longbow/refine/__init__.py
src/longbow/refine/command.py
src/longbow/scsplit/__init__.py
src/longbow/scsplit/command.py
src/longbow/segment/__init__.py
src/longbow/segment/command.py
src/longbow/stats/__init__.py
src/longbow/stats/command.py
src/longbow/train/__init__.py
src/longbow/train/command.py
src/longbow/utils/bam_utils.py
src/longbow/utils/barcode_utils.py
src/longbow/utils/cli_utils.py
src/longbow/utils/constants.py
src/longbow/utils/model.py
src/longbow/utils/plot_utils.py
src/maslongbow.egg-info/PKG-INFO
src/maslongbow.egg-info/SOURCES.txt
src/maslongbow.egg-info/dependency_links.txt
src/maslongbow.egg-info/entry_points.txt
src/maslongbow.egg-info/requires.txt
src/maslongbow.egg-info/top_level.txt
tests/__init__.py
tests/utils.py
tests/acceptance/__init__.py
tests/integration/__init__.py
tests/integration/test_annotate.py
tests/test_data/mas10_test_input.bam
tests/test_data/mas10_test_input.bam.pbi
tests/test_data/mas10_test_input.read_names.txt
tests/test_data/mas15_test_input.bam
tests/test_data/mas15_test_input.bam.pbi
tests/test_data/mas15_test_input.read_names.txt
tests/test_data/annotate/mas10_expected.bam
tests/test_data/annotate/mas15_expected.bam
tests/test_data/resources/SIRV_Library.fasta
tests/test_data/resources/SIRV_Library.fasta.fai
tests/test_data/resources/SIRV_Library.gff3
tests/unit/__init__.py
tests/unit/test_placeholder.py