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ChangeLog
LICENSE
README.md
image.png
pyproject.toml
requirements.txt
setup.cfg
setup.py
bin/__init__.py
bin/martiniglass
example/generate_expected_files.sh
example/expected_output/1UBQ_cg.pdb
example/expected_output/1UBQ_clean.pdb
example/expected_output/1ubq.pdb
example/expected_output/cg_bonds-v6.tcl
example/expected_output/cg_secondary_structure.tcl
example/expected_output/chain_A.ssd
example/expected_output/eigen.py
example/expected_output/en.top
example/expected_output/martini.itp
example/expected_output/molecule_0.itp
example/expected_output/molecule_0_cgsecstruct.txt
example/expected_output/molecule_0_en.itp
example/expected_output/molecule_0_surplus_en.txt
example/expected_output/molecule_0_vis.itp
example/expected_output/newbox.gro
example/expected_output/topol.top
example/expected_output/vis.top
example/expected_output/vis.vmd
martiniglass/__init__.py
martiniglass.egg-info/PKG-INFO
martiniglass.egg-info/SOURCES.txt
martiniglass.egg-info/dependency_links.txt
martiniglass.egg-info/not-zip-safe
martiniglass.egg-info/pbr.json
martiniglass.egg-info/requires.txt
martiniglass.egg-info/top_level.txt
martiniglass/data/cg_bonds-v6.tcl
martiniglass/data/cg_secondary_structure.tcl
martiniglass/data/eigen.py
martiniglass/data/vis.vmd
martiniglass/data/old_cg_bonds/cg_bonds-v5.tcl
martiniglass/src/__init__.py
martiniglass/src/elastic_writer.py
martiniglass/src/go_writer.py
martiniglass/src/index_writer.py
martiniglass/src/molecule_editing.py
martiniglass/src/system_reading.py
martiniglass/src/topology.py