CITATIONS.md
MANIFEST.in
QUICK_START.md
README.md
setup.cfg
setup.py
versioneer.py
bin/marsi
marsi/__init__.py
marsi/_version.py
marsi/alembic.ini
marsi/bigg_api.py
marsi/config.py
marsi/utils.py
marsi.egg-info/PKG-INFO
marsi.egg-info/SOURCES.txt
marsi.egg-info/dependency_links.txt
marsi.egg-info/requires.txt
marsi.egg-info/top_level.txt
marsi/alembic/README
marsi/alembic/__init__.py
marsi/alembic/env.py
marsi/alembic/script.py.mako
marsi/alembic/versions/__init__.py
marsi/alembic/versions/c1b678211e9d_baseline.py
marsi/alembic/versions/ef39a4ae2c8c_add_solubility.py
marsi/chemistry/__init__.py
marsi/chemistry/common.py
marsi/chemistry/common_ext.c
marsi/chemistry/common_ext.pxd
marsi/chemistry/common_ext.pyx
marsi/chemistry/molecule.py
marsi/chemistry/openbabel.py
marsi/chemistry/qsar.py
marsi/chemistry/rdkit.py
marsi/chemistry/solubility.py
marsi/cli/__init__.py
marsi/cli/app.py
marsi/cli/controllers/__init__.py
marsi/cli/controllers/chemistry.py
marsi/cli/controllers/database.py
marsi/cli/controllers/modeling.py
marsi/cobra/__init__.py
marsi/cobra/utils.py
marsi/cobra/flux_analysis/__init__.py
marsi/cobra/flux_analysis/analysis.py
marsi/cobra/flux_analysis/manipulation.py
marsi/cobra/strain_design/__init__.py
marsi/cobra/strain_design/design_methods.py
marsi/cobra/strain_design/evolutionary.py
marsi/cobra/strain_design/metaheuristic.py
marsi/cobra/strain_design/post_processing.py
marsi/cobra/strain_design/target.py
marsi/io/__init__.py
marsi/io/bigg.py
marsi/io/build_database.py
marsi/io/data.py
marsi/io/db.py
marsi/io/enrichment.py
marsi/io/parsers.py
marsi/io/plots.py
marsi/io/retriaval.py
marsi/io/files/bigg_models_metabolites.txt
marsi/io/files/bigg_models_reactions.txt
marsi/io/files/pubchem_compound_analogs_antimetabolites.txt
marsi/nearest_neighbors/__init__.py
marsi/nearest_neighbors/model.py
marsi/nearest_neighbors/model_ext.c
marsi/nearest_neighbors/model_ext.pyx