.gitignore
LICENSE.txt
MANIFEST
MANIFEST.in
README.md
setup.py
MarkerMAG/MarkerMAG_config.py
MarkerMAG/SILVA_16S_order.fasta
MarkerMAG/VERSION
MarkerMAG/__init__.py
MarkerMAG/barrnap_16s.py
MarkerMAG/filter_sam.py
MarkerMAG/gc_bias.py
MarkerMAG/get_16s_depth.py
MarkerMAG/get_cp_num.py
MarkerMAG/get_mag_depth.py
MarkerMAG/link_16s.py
MarkerMAG/matam_16s.py
MarkerMAG/polish_16s.py
MarkerMAG/recovery_16s.py
MarkerMAG/rename_reads.py
MarkerMAG/subsample_reads.py
MarkerMAG/uclust_16s.py
MarkerMAG.egg-info/PKG-INFO
MarkerMAG.egg-info/SOURCES.txt
MarkerMAG.egg-info/dependency_links.txt
MarkerMAG.egg-info/requires.txt
MarkerMAG.egg-info/top_level.txt
MarkerMAG/vxtractor/README.txt
MarkerMAG/vxtractor/gpl.txt
MarkerMAG/vxtractor/readmefungiLSU.txt
MarkerMAG/vxtractor/vxtractor.pl
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V1rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V2rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V3rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V4rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V5rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V6rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V7rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V8rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_archaea/V9rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V1rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V2rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V3rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V4rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V5rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V6rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V7rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V8rightshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9leftshort.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightlong.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightlong.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightlong.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightlong.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightlong.HMM.h3p
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightshort.HMM
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightshort.HMM.h3f
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightshort.HMM.h3i
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightshort.HMM.h3m
MarkerMAG/vxtractor/HMMs/SSU_bacteria/V9rightshort.HMM.h3p
bin/MarkerMAG
doc/README_GC_bias.md
doc/README_arguments.md
doc/README_barrnap_16s.md
doc/README_example_cmds.md
doc/README_matam_16s.md
doc/README_rename_reads.md
doc/README_subsample_reads.md
doc/README_uclust_16s.md
doc/example_cmds.txt
doc/images/FP_GC_bias.png
doc/images/FP_read_coverage.png
doc/images/GI_0416_identified_linkages_contig_level.txt
doc/images/Intra_genome_16S_divergence.png
doc/images/MarkerMAG_workflow.png
doc/images/Tablet_error_report.png
doc/images/linkages_plot_1.png
doc/images/linkages_plot_2.png
doc/images/linking_reads.png
doc/images/logo.jpg
doc/vis_folder/SS_m1___SS___NODE_11_R1.fa
doc/vis_folder/SS_m1___SS___NODE_11_R2.fa
doc/vis_folder/SS_m1___SS___NODE_11_cbd.fa
doc/vis_folder/SS_m1___SS___NODE_11_cbd.log
doc/vis_folder/SS_m1___SS___NODE_11_cbd.sam
doc/vis_folder/SS_m1___SS___NODE_11_cbd.tablet
script_backup/tunning_rd1.py
script_backup/tunning_rd2.py
script_backup/tunning_rd2_mini_to_mag.py
script_backup/000/Tax4Fun2.sh
script_backup/000/Tax4Fun2_Kelp.py
script_backup/000/assess_cp_num_GI.py
script_backup/000/get_16s_copy_num_1.py
script_backup/000/get_16s_copy_num_2.py
script_backup/000/get_16s_copy_num_3_only_uniq.py
script_backup/000/get_16s_copy_num_4_non_overlapping.py
script_backup/000/get_cp_num.sh
script_backup/000/get_cp_num_b1.py
script_backup/000/get_ref_16s_copy_num.py
script_backup/000/get_ref_16s_copy_num_uniq.py
script_backup/000/get_ref_genome_metadata.py
script_backup/000/keep_both_mapped.py
script_backup/000/opt_estimations.py
script_backup/000/preprocess_16s.py
script_backup/000/subsample_silva_16S.py
script_backup/000/tmp_1.py
script_backup/000/tmp_10_rm_overlapping_reads.py
script_backup/000/tmp_11.py
script_backup/000/tmp_12.py
script_backup/000/tmp_13_similarity_distribution.py
script_backup/000/tmp_2_simulate_reads.py
script_backup/000/tmp_3.py
script_backup/000/tmp_4.py
script_backup/000/tmp_5.py
script_backup/000/tmp_6_blast.py
script_backup/000/tmp_7.py
script_backup/000/tmp_8_sep_reads.py
script_backup/000/tmp_9.py
script_backup/assess_linkages/assess_linkages_GI.py
script_backup/assess_linkages/assess_linkages_OF_138.py
script_backup/assess_linkages/assess_linkages_Oral.py
script_backup/assess_linkages/assess_linkages_Pig.py
script_backup/assess_linkages/assess_linkages_Sponge.py
script_backup/assess_linkages/assess_linkages_kelp_138.py
script_backup/assess_linkages/get_depth.py
script_backup/assess_linkages/good_MAG_with_16S.py
script_backup/assess_linkages/increased_MAG_with_16s.py
script_backup/assess_linkages/s16.py