CHANGELOG.rst
LICENSE
MANIFEST.in
README.rst
setup.py
tox.ini
MAnorm.egg-info/PKG-INFO
MAnorm.egg-info/SOURCES.txt
MAnorm.egg-info/dependency_links.txt
MAnorm.egg-info/entry_points.txt
MAnorm.egg-info/not-zip-safe
MAnorm.egg-info/requires.txt
MAnorm.egg-info/top_level.txt
docs/Makefile
docs/make.bat
docs/source/changelog.rst
docs/source/conf.py
docs/source/faq.rst
docs/source/help.rst
docs/source/index.rst
docs/source/install.rst
docs/source/license.rst
docs/source/usage.rst
docs/source/image/workflow.jpg
manorm/__init__.py
manorm/cli.py
manorm/exceptions.py
manorm/io.py
manorm/logging.py
manorm/model.py
manorm/plot.py
manorm/stats.py
manorm/read/__init__.py
manorm/read/parsers.py
manorm/region/__init__.py
manorm/region/parsers.py
manorm/region/utils.py
tests/conftest.py
tests/test_cli.py
tests/test_logging.py
tests/test_read_class.py
tests/test_read_format.py
tests/test_read_parsers.py
tests/test_region_class.py
tests/test_region_format.py
tests/test_region_parsers.py
tests/test_region_utils.py
tests/data/H1_H3K4me3_vs_K562_H3K4me3_all_MAvalues.xls
tests/data/H1hescH3k4me3Rep1_peaks.xls
tests/data/H1hescH3k4me3Rep1_reads.bed
tests/data/K562H3k4me3Rep1_peaks.xls
tests/data/K562H3k4me3Rep1_reads.bed
tests/data/test_peaks.bed
tests/data/test_peaks.narrowPeak
tests/data/test_peaks_macs.xls
tests/data/test_peaks_macs2.xls
tests/data/test_peaks_summit.bed
tests/data/test_reads.bam
tests/data/test_reads.bed
tests/data/test_reads.bedpe
tests/data/test_reads.sam
tests/data/test_reads_pe.bam