MANIFEST.in
README.rst
setup.cfg
setup.py
MAGINE.egg-info/PKG-INFO
MAGINE.egg-info/SOURCES.txt
MAGINE.egg-info/dependency_links.txt
MAGINE.egg-info/entry_points.txt
MAGINE.egg-info/requires.txt
MAGINE.egg-info/top_level.txt
magine/__init__.py
magine/copy_sample_dbs.py
magine/logging.py
magine/data/__init__.py
magine/data/base.py
magine/data/experimental_data.py
magine/data/storage.py
magine/data/tools.py
magine/enrichment/__init__.py
magine/enrichment/_valid_enricher_libs.txt
magine/enrichment/enrichment_result.py
magine/enrichment/enrichr.py
magine/enrichment/deprecated/__init__.py
magine/enrichment/deprecated/ontology_analysis.py
magine/enrichment/deprecated/ontology_tools.py
magine/enrichment/deprecated/test_ontology_tools.py
magine/enrichment/deprecated/databases/__init__.py
magine/enrichment/deprecated/databases/gene_ontology.py
magine/html_templates/__init__.py
magine/html_templates/html_tools.py
magine/html_templates/templates/base.html
magine/html_templates/templates/filter_table.html
magine/html_templates/templates/main_view.html
magine/html_templates/templates/plotly_template.html
magine/html_templates/templates/single_table_view.html
magine/html_templates/templates/subgraph.html
magine/html_templates/templates/subgraph_2.html
magine/html_templates/templates/subgraph_3.html
magine/html_templates/templates/workflow_template.html
magine/mappings/__init__.py
magine/mappings/chemical_mapper.py
magine/mappings/gene_mapper.py
magine/mappings/maps.py
magine/mappings/databases/__init__.py
magine/mappings/databases/download_libraries.py
magine/mappings/databases/pubchem.py
magine/mappings/databases/update.py
magine/networks/__init__.py
magine/networks/annotated_set.py
magine/networks/dev_tools.py
magine/networks/exporters.py
magine/networks/network_generator.py
magine/networks/standards.py
magine/networks/subgraphs.py
magine/networks/utils.py
magine/networks/correlation_networks/__init__.py
magine/networks/correlation_networks/calculate_correlation_network.py
magine/networks/databases/__init__.py
magine/networks/databases/biogrid_interactions.py
magine/networks/databases/hmdb.py
magine/networks/databases/kegg_kgml.py
magine/networks/databases/reactome_functional_interaction.py
magine/networks/databases/signor.py
magine/networks/databases/trrust.py
magine/networks/databases/update.py
magine/networks/visualization/__init__.py
magine/networks/visualization/cytoscape.py
magine/networks/visualization/graphviz.py
magine/networks/visualization/igraph_viz.py
magine/networks/visualization/mpl.py
magine/networks/visualization/notebooks/__init__.py
magine/networks/visualization/notebooks/cyjs_options.py
magine/networks/visualization/notebooks/view.py
magine/plotting/__init__.py
magine/plotting/heatmaps.py
magine/plotting/species_plotting.py
magine/plotting/venn_diagram_maker.py
magine/plotting/volcano_plots.py
magine/plotting/wordcloud_tools.py
magine/tests/__init__.py
magine/tests/sample_experimental_data.py
magine/tests/test_annotated_network.py
magine/tests/test_correlation_network.py
magine/tests/test_cytoscape_viewer.py
magine/tests/test_data_tools.py
magine/tests/test_database_download.py
magine/tests/test_enrichment_tools.py
magine/tests/test_enrichr.py
magine/tests/test_exp_data_class.py
magine/tests/test_html_creater.py
magine/tests/test_id_mapping.py
magine/tests/test_kgml_to_graph.py
magine/tests/test_network_downloads.py
magine/tests/test_network_exporters.py
magine/tests/test_network_generation.py
magine/tests/test_network_subgraphs.py
magine/tests/test_network_utils.py
magine/tests/test_network_viz.py
magine/tests/test_plotting.py
magine/tests/Data/enrichr_test_enrichr.csv
magine/tests/Data/example_apoptosis.csv
magine/tests/Data/large_example.csv
magine/tests/Data/proteomics_up_enrichment_array.csv
magine/tests/Data/reformatted_data.csv.gz
magine/tests/Data/subset_data.py
magine/tests/Data/test_data.csv
magine/tests/Data/test_df_all_data.csv
magine/tests/Data/test_proteomics_up_all_data.csv
magine/tests/KEGG/hsa04071.xml
magine/tests/Network_files/sample_network.gml
magine/tests/Network_files/t_1_2_colored_enrichment.graphml
magine/tests/Network_files/test_all_colored_enrichment.graphml
scripts/__init__.py
scripts/create_template_project
scripts/download_databases.py