MANIFEST.in
README.md
setup.py
maginator/__init__.py
maginator/controller.py
maginator/main.py
maginator/messages.py
maginator/workflow.py
maginator.egg-info/PKG-INFO
maginator.egg-info/SOURCES.txt
maginator.egg-info/dependency_links.txt
maginator.egg-info/entry_points.txt
maginator.egg-info/not-zip-safe
maginator.egg-info/requires.txt
maginator.egg-info/top_level.txt
maginator/workflow/alignment.Snakefile
maginator/workflow/filter.Snakefile
maginator/workflow/filter_geneclusters.Snakefile
maginator/workflow/gene_count_mat.Snakefile
maginator/workflow/gene_tax.Snakefile
maginator/workflow/gtdbtk.Snakefile
maginator/workflow/outgroup.Snakefile
maginator/workflow/parse_gtdbtk.Snakefile
maginator/workflow/phylo.Snakefile
maginator/workflow/pileup.Snakefile
maginator/workflow/pileup_parse.Snakefile
maginator/workflow/prescreening_genes.Snakefile
maginator/workflow/reads_to_bins.Snakefile
maginator/workflow/signature_genes.Snakefile
maginator/workflow/envs/filter_geneclusters.yaml
maginator/workflow/envs/filter_gtdbtk.yaml
maginator/workflow/envs/phylo.yaml
maginator/workflow/envs/signature_genes.yaml
maginator/workflow/scripts/Functions_v4.R
maginator/workflow/scripts/MGS_counts.R
maginator/workflow/scripts/SG_refinement.R
maginator/workflow/scripts/abundance_profiles.R
maginator/workflow/scripts/allele_frequency_mat.R
maginator/workflow/scripts/concat.py
maginator/workflow/scripts/filter.py
maginator/workflow/scripts/gene_cluster2tax.py
maginator/workflow/scripts/gene_refinement_plots.R
maginator/workflow/scripts/marker_genes.py
maginator/workflow/scripts/matrix2SG_formatconversion.R
maginator/workflow/scripts/mpileup.py
maginator/workflow/scripts/parse_gtdbtk.py
maginator/workflow/scripts/prescreening_genes.R
maginator/workflow/scripts/sort_gene_mat.py
maginator/workflow/scripts/species_collections.py
maginator/workflow/scripts/synteny.py