Metadata-Version: 1.1
Name: machado
Version: 0.4.0
Summary: This library provides users with a framework to store, search and visualize biological data.
Home-page: https://github.com/lmb-embrapa/machado
Author: LMB
Author-email: UNKNOWN
License: GPL License
Description: [![build-status-image]][travis]
        [![cov-status-image]][codecov]
        [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
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        # Machado
        
        Machado is a Django application that contains tools to interact with a Chado database.
        It provides users with a framework to store, search and visualize biological data.
        Detailed documentation can be found in the **docs** directory ([Read the docs](http://machado.readthedocs.io)).
        
        
        ## Features
        - There are data loaders for the major bioinformatics formats: fasta, gff, obo, bibtex, blast, interproscan, orthomcl
        - The Machado API delivers data directly to the JBrowse genome browser
        - The Haystack framework provides a very fast query interface using the Elasticsearch engine
        
        ## Installation
        Please refer to the complete documentation at [Read the docs](http://machado.readthedocs.io/en/latest/installation.html).
        
        ## Docker
        
        You can build your Machado instance using Docker: https://github.com/lmb-embrapa/machado-docker
        
        ## Demo
        
        [https://www.machado.cnptia.embrapa.br](https://www.machado.cnptia.embrapa.br "machado demo")
        
        ## Contributing
        
        Machado is run by volunteers and we are always looking for people interested in helping with code development, documentation writing, and bug report.
        
        If you wish to contribute, please create an issue.
        
        ## License
        
        Machado - A Django implementation of Chado's schema.
        Copyright (C) 2018 Embrapa
        
        Machado is free software: you can redistribute it and/or modify
        it under the terms of the GNU General Public License as published by
        the Free Software Foundation, either version 3 of the License, or
        (at your option) any later version.
        
        This program is distributed in the hope that it will be useful,
        but WITHOUT ANY WARRANTY; without even the implied warranty of
        MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
        GNU General Public License for more details.
        
        You should have received a copy of the GNU General Public License
        along with this program.  If not, see <https://www.gnu.org/licenses/>.
        
        Additional permission under GNU GPL version 3 section 7
        
        If you modify this Program, or any covered work, by linking or combining
        it with Chado (or a modified version of that library), containing parts
        covered by the terms of Artistic License 2.0, the licensors of this Program
        grant you additional permission to convey the resulting work. {Corresponding
        Source for a non-source form of such a combination shall include the source
        code for the parts of Chado used as well as that of the covered work.}
        
        See LICENSE.txt for complete gpl-3.0 license.
        
        [build-status-image]: https://secure.travis-ci.org/lmb-embrapa/machado.svg?branch=master
        [travis]: https://travis-ci.org/lmb-embrapa/machado
        [cov-status-image]: https://img.shields.io/codecov/c/github/lmb-embrapa/machado/master.svg
        [codecov]: https://codecov.io/gh/lmb-embrapa/machado
        
        ## Please cite
        
        Machado: Open source genomics data integration framework.<br/>
        [GigaScience, Volume 9, Issue 9, September 2020, giaa097](https://academic.oup.com/gigascience/article-abstract/doi/10.1093/gigascience/giaa097/5905760) <br/>
        [![doi](http://img.shields.io/badge/doi-10.1093%2Fgigascience%2Fgiaa097-blue.svg?style=flat)](https://doi.org/10.1093/gigascience/giaa097) 
        [![pubmed](http://img.shields.io/badge/pubmed-32930331-blue.svg?style=flat)](https://pubmed.ncbi.nlm.nih.gov/32930331)
        
        
Platform: UNKNOWN
Classifier: Environment :: Console
Classifier: Framework :: Django :: 3.2
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3
