Metadata-Version: 2.4
Name: macapype
Version: 0.5.7rc19
Summary: Pipeline for anatomic processing for macaque 
Author: Macatools team
Maintainer: Macapype developers
License: BSD-3-Clause
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENCE.txt
Requires-Dist: nipype
Requires-Dist: rdflib==6.3.1
Requires-Dist: pandas==2.2.3
Requires-Dist: matplotlib
Requires-Dist: nilearn
Requires-Dist: networkx
Requires-Dist: pybids
Requires-Dist: scikit-image
Requires-Dist: nibabel
Requires-Dist: numpy
Requires-Dist: SimpleITK
Requires-Dist: brainles-hd-bet==0.0.11
Provides-Extra: doc-deps
Requires-Dist: sphinx; extra == "doc-deps"
Requires-Dist: sphinx-gallery; extra == "doc-deps"
Requires-Dist: sphinx_bootstrap_theme; extra == "doc-deps"
Requires-Dist: numpydoc; extra == "doc-deps"
Requires-Dist: sphinxcontrib-fulltoc; extra == "doc-deps"
Provides-Extra: test-deps
Requires-Dist: pytest; extra == "test-deps"
Requires-Dist: pytest-cov; extra == "test-deps"
Requires-Dist: codecov; extra == "test-deps"
Provides-Extra: flake-deps
Requires-Dist: flake8; extra == "flake-deps"
Provides-Extra: test
Requires-Dist: macapype[flake_deps,test_deps]; extra == "test"
Provides-Extra: doc
Requires-Dist: macapype[doc_deps,flake_deps,test_deps]; extra == "doc"
Dynamic: license-file

[![Downloads](https://pepy.tech/badge/macapype)](https://pepy.tech/project/macapype)
[![Build Status](https://travis-ci.com/Macatools/macapype.svg?branch=master)](https://travis-ci.com/Macatools/macapype)

# Quick Install
To use it:
```shell
pip install macapype
```

To develop:
```shell
git clone https://github.com/Macatools/macapype.git
cd macapype
python setup.py develop
```

# Docker image
```shell
docker pull macatools/macapype/latest
```

# Documentation

https://macatools.github.io/macapype/

# Related to project:

[A guide for PNH MRI processing](https://github.com/PRIME-RE/prime-re.github.io/wiki), and in particular, the session on [structural MRI processing](https://github.com/PRIME-RE/prime-re.github.io/wiki/Structural-processing)

[Open Science Room OSR 2020 of OHBM congress presentation of macapype](https://docs.google.com/presentation/d/11RrcZW25MyLbc0_9T2zzhwy5RyUvcjYG4UAgzjuuv8M/edit?usp=sharing)


# Forum macapype_users

The macapype_users can be be found [here](https://framateam.org/signup_user_complete/?id=ebtxf45nmiyqmkm8e6oh9qjsoe) (requires a framateam/framagit account, but should be accessible with a github or bitbucket account)

