LICENCE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
docs/conf.py
examples_doc/plot_segment_sphinx_macaque_ants_based.py
macapype/__init__.py
macapype/_version.py
macapype.egg-info/PKG-INFO
macapype.egg-info/SOURCES.txt
macapype.egg-info/dependency_links.txt
macapype.egg-info/entry_points.txt
macapype.egg-info/requires.txt
macapype.egg-info/top_level.txt
macapype/bash/CropVolume.sh
macapype/bash/IterREGBET.sh
macapype/bash/NMT_subject_align
macapype/bash/NMT_subject_align.csh
macapype/bash/T1xT2BET.sh
macapype/bash/T1xT2BiasFieldCorrection.sh
macapype/bash/atlasBREX.sh
macapype/nodes/__init__.py
macapype/nodes/correct_bias.py
macapype/nodes/denoise.py
macapype/nodes/extract_brain.py
macapype/nodes/pad.py
macapype/nodes/prepare.py
macapype/nodes/register.py
macapype/nodes/segment.py
macapype/nodes/surface.py
macapype/nodes/tests/test_segment.py
macapype/nodes/tests/test_surface.py
macapype/pipelines/__init__.py
macapype/pipelines/correct_bias.py
macapype/pipelines/extract_brain.py
macapype/pipelines/full_pipelines.py
macapype/pipelines/prepare.py
macapype/pipelines/register.py
macapype/pipelines/rename.py
macapype/pipelines/segment.py
macapype/pipelines/surface.py
macapype/pipelines/tests/test_full_pipelines.py
macapype/pipelines/tests/test_prepare.py
macapype/pipelines/tests/test_surface_pipelines.py
macapype/utils/__init__.py
macapype/utils/data_test_servers.json
macapype/utils/misc.py
macapype/utils/regex_subs.json
macapype/utils/subs.json
macapype/utils/templates.json
macapype/utils/utils_bids.py
macapype/utils/utils_nodes.py
macapype/utils/utils_params.py
macapype/utils/utils_spm.py
macapype/utils/utils_tests.py
macapype/utils/tests/test_misc.py
macapype/utils/tests/test_utils_bids.py
macapype/utils/tests/test_utils_nodes.py
macapype/utils/tests/test_utils_tests.py
workflows/__init__.py
workflows/params_segment_baboon_ants.json
workflows/params_segment_baboon_spm.json
workflows/params_segment_chimp_ants.json
workflows/params_segment_macaque_ants.json
workflows/params_segment_macaque_spm.json
workflows/params_segment_marmo_ants.json
workflows/params_segment_marmo_spm.json
workflows/params_segment_marmot1_ants.json
workflows/segment_from_mask_pnh_ants_based.py
workflows/segment_pnh.py
workflows/segment_pnh_regis.py
workflows/which_spm.py