pandas>=1.5.0
numpy>=1.21.0
polars>=0.19.0
pyarrow>=10.0.0
dask[dataframe]>=2023.1.0
pydantic>=2.0.0
typer>=0.9.0
rich>=13.0.0
plotly>=5.15.0
seaborn>=0.12.0
matplotlib>=3.6.0
scipy>=1.9.0
scikit-learn>=1.1.0
biopython>=1.80
networkx>=2.8
pyyaml>=6.0

[benchmark]
pytest-benchmark>=4.0
memory-profiler>=0.61

[dev]
pytest>=7.0
pytest-cov>=4.0
black>=23.0
isort>=5.12
mypy>=1.0
ruff>=0.1.0
pre-commit>=3.0

[docs]
sphinx>=6.0
sphinx-rtd-theme>=1.3
myst-parser>=2.0
nbsphinx>=0.9
