.gitignore
.pre-commit-config.yaml
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
.github/workflows/black.yml
.github/workflows/tests.yml
docs/conf.py
docs/directives.py
docs/generate_api_reference.py
docs/index.rst
docs/requirements.docs.in
docs/requirements.docs.txt
docs/_static/theme_overrides.css
lshmm/__init__.py
lshmm/_version.py
lshmm/api.py
lshmm/core.py
lshmm/fb_diploid.py
lshmm/fb_haploid.py
lshmm/jit.py
lshmm/vit_diploid.py
lshmm/vit_haploid.py
lshmm.egg-info/PKG-INFO
lshmm.egg-info/SOURCES.txt
lshmm.egg-info/dependency_links.txt
lshmm.egg-info/requires.txt
lshmm.egg-info/top_level.txt
notebooks/demo_haploid.ipynb
tests/__init__.py
tests/lsbase.py
tests/test_api_fb_diploid.py
tests/test_api_fb_haploid.py
tests/test_api_fb_haploid_multi.py
tests/test_api_vit_diploid.py
tests/test_api_vit_haploid.py
tests/test_api_vit_haploid_multi.py
tests/test_nontree_fb_diploid.py
tests/test_nontree_fb_haploid.py
tests/test_nontree_vit_diploid.py
tests/test_nontree_vit_haploid.py