from setuptools import setup

setup(name='lsaBGC',
      version='1.36',
      description='Suite for comparative genomic, population genetics and evolutionary analysis, as well as metagenomic mining of micro-evolutionary novelty in BGCs all in the context of a single lineage of interest.',
      url='http://github.com/Kalan-Lab/lsaBGC/',
      author='Rauf Salamzade',
      author_email='salamzader@gmail.com',
      license='BSD-3',
      packages=['lsaBGC'],
      scripts=['scripts/setup_annotation_dbs.py',
               'scripts/setup_bigscape.py',
               'scripts/GSeeF.py',
               'scripts/compareBGCtoGenomeCodonUsage.py',
               'scripts/listAllGenomesInDirectory.py',
               'scripts/listAllBGCGenbanksInDirectory.py',
               'scripts/runProdigalAndMakeProperGenbank.py',
               'scripts/visualize_BGC-Ome.py',
               'scripts/processAndReformatNCBIGenbanks.py',
               'scripts/simpleProteinExtraction.py',
               'scripts/createPickleOfSampleAnnotationListingFile.py',
               'scripts/popSizeAndSampleSelector.py',
               'scripts/readifyAdditionalGenomes.py',
               'workflows/lsaBGC-Easy.py',
               'workflows/lsaBGC-Euk-Easy.py',
               'workflows/lsaBGC-AutoAnalyze.py',
               'workflows/lsaBGC-AutoExpansion.py',
               'bin/lsaBGC-Ready.py',
               'bin/lsaBGC-Cluster.py',
               'bin/lsaBGC-See.py',
               'bin/lsaBGC-ComprehenSeeIve.py',
               'bin/lsaBGC-PopGene.py', 
               'bin/lsaBGC-Refiner.py', 
               'bin/lsaBGC-Expansion.py', 
               'bin/lsaBGC-Divergence.py', 
               'bin/lsaBGC-DiscoVary.py',
               'bin/lsaBGC-MIBiGMapper.py'],
      zip_safe=False)
