.codacy.yml
.coveragerc
.gitignore
.landscape.yml
.travis.yml
CHANGELOG.rst
LICENSE.txt
MANIFEST.in
README.rst
UPGRADE.txt
requirements.in
requirements.txt
setup.cfg
setup.py
build_scripts/lorax_tool.sh
build_scripts/example/0_defs_to_source.sh
build_scripts/example/1_build_lorax.sh
build_scripts/example/2_builder_to_user.sh
build_scripts/example/3_test_rc.sh
build_scripts/example/4_configure_prod_on_stage.sh
build_scripts/example/5_test_prod.sh
build_scripts/example/README.rst
build_scripts/example/dev_config.sh
build_scripts/example/my_build.sh
build_scripts/example/prod_config.sh
build_scripts/example/removedirs.sh
build_scripts/example/stage_config.sh
docs/Makefile
docs/anaconda.rst
docs/conf.py
docs/configuration.rst
docs/direct.rst
docs/goals.rst
docs/index.rst
docs/installation.rst
docs/lorax.rst
docs/lorax_big_icon.jpg
docs/lorax_processes.svg
docs/modules.rst
docs/monitoring.rst
docs/running.rst
docs/test.rst
docs/urls.rst
lorax/__init__.py
lorax/cli.py
lorax/config.py
lorax/config_file.py
lorax/core.py
lorax/filesystem.py
lorax/logs.py
lorax/version.py
lorax.egg-info/PKG-INFO
lorax.egg-info/SOURCES.txt
lorax.egg-info/dependency_links.txt
lorax.egg-info/entry_points.txt
lorax.egg-info/not-zip-safe
lorax.egg-info/requires.txt
lorax.egg-info/top_level.txt
lorax/bin/server_env.sh
lorax/bin/server_run.py
lorax/etc/alertmanager.yml
lorax/etc/prometheus.yml
lorax/etc/redis.conf
lorax/etc/server-conf.sh
lorax/etc/supervisord.conf
lorax/etc/conf.d/server
lorax/etc/nginx/mime.types
lorax/etc/nginx/nginx.conf
lorax/etc/rc.d/server
lorax/fasttree/ChangeLog.txt
lorax/fasttree/FastTree-2.1.10.c
lorax/fasttree/LICENSE.txt
lorax/fasttree/README.txt
lorax/static/favicon.ico
lorax/static/css/phyd3.min.css
lorax/static/js/phyd3.min.js
lorax/templates/index.html
lorax/test/59026816.hmm
lorax/test/aspartic_peptidases.faa
lorax/test/aspartic_peptidases_aligned.faa
lorax/test/create_families.sh
lorax/test/get_big_model.sh
lorax/test/post_FASTA.sh
lorax/test/put_HMM.sh
lorax/test/test_targets.sh
lorax/test/zeama.faa
lorax/user_conf/server_rc
lorax/var/html/404.html
lorax/var/html/50x.html
lorax/var/html/index.html