.gitignore
.travis.yml
CHANGELOG.rst
LICENSE.txt
MANIFEST.in
README.rst
UPGRADE.txt
requirements.in
requirements.txt
setup.cfg
setup.py
build_scripts/build_example.sh
build_scripts/config_example.sh
build_scripts/get_build_scripts.sh
build_scripts/lorax_build.sh
build_scripts/run_lorax_tests.sh
docs/INSTALL.anaconda.txt
docs/INSTALL.configure+run.txt
docs/INSTALL.direct.txt
docs/INSTALL.mac.txt
docs/INSTALL.test.txt
docs/INSTALL.unix.txt
docs/MONITOR.txt
docs/Makefile
docs/conf.py
docs/index.rst
lorax/__init__.py
lorax/cli.py
lorax/config.py
lorax/config_file.py
lorax/filesystem.py
lorax/logging.py
lorax/version.py
lorax.egg-info/PKG-INFO
lorax.egg-info/SOURCES.txt
lorax.egg-info/dependency_links.txt
lorax.egg-info/entry_points.txt
lorax.egg-info/not-zip-safe
lorax.egg-info/requires.txt
lorax.egg-info/top_level.txt
lorax/bin/server_env
lorax/bin/server_run.py
lorax/etc/redis.conf
lorax/etc/server-conf.sh
lorax/etc/supervisord.conf
lorax/etc/conf.d/server
lorax/etc/nginx/mime.types
lorax/etc/nginx/nginx.conf
lorax/etc/rc.d/server
lorax/fasttree/ChangeLog.txt
lorax/fasttree/FastTree-2.1.10.c
lorax/fasttree/LICENSE.txt
lorax/fasttree/README.txt
lorax/static/favicon.ico
lorax/static/css/phyd3.min.css
lorax/static/js/phyd3.min.js
lorax/templates/index.html
lorax/test/59026816.hmm
lorax/test/aspartic_peptidases.faa
lorax/test/aspartic_peptidases_aligned.faa
lorax/test/create_families.sh
lorax/test/get_big_model.sh
lorax/test/lorax_test.sh
lorax/test/post_FASTA.sh
lorax/test/put_HMM.sh
lorax/test/zeama.faa
lorax/user_conf/server_rc
lorax/var/html/404.html
lorax/var/html/50x.html
lorax/var/html/index.html