README.md
lolipop
setup.py
lolipop.egg-info/PKG-INFO
lolipop.egg-info/SOURCES.txt
lolipop.egg-info/dependency_links.txt
lolipop.egg-info/requires.txt
lolipop.egg-info/top_level.txt
muller/__init__.py
muller/__main__.py
muller/commandline_parser.py
muller/treetools.py
muller/widgets.py
muller/clustering/__init__.py
muller/clustering/clustercalc.py
muller/clustering/generate_genotypes.py
muller/clustering/genotype_reorder.py
muller/clustering/hierarchy.py
muller/clustering/metrics/__init__.py
muller/clustering/metrics/distance_cache.py
muller/clustering/metrics/distance_calculator.py
muller/clustering/metrics/distance_methods.py
muller/dataio/__init__.py
muller/dataio/annotations.py
muller/dataio/generate_scripts.py
muller/dataio/generate_tables.py
muller/dataio/genotypecollection.py
muller/dataio/import_file.py
muller/dataio/import_tables.py
muller/dataio/import_timeseries.py
muller/dataio/mullerformat.py
muller/dataio/projectdata.py
muller/graphics/__init__.py
muller/graphics/dendrogram.py
muller/graphics/distancegraphs.py
muller/graphics/graphicsio.py
muller/graphics/heatmap.py
muller/graphics/lineageplot.py
muller/graphics/muller_plot.py
muller/graphics/panels.py
muller/graphics/plotderivative.py
muller/graphics/plottimeseries.py
muller/graphics/palettes/__init__.py
muller/graphics/palettes/colorset.py
muller/graphics/palettes/general.py
muller/graphics/palettes/palette.py
muller/graphics/palettes/palette_annotation.py
muller/graphics/palettes/palette_distinctive.py
muller/graphics/palettes/palette_lineage.py
muller/inheritance/__init__.py
muller/inheritance/areascore.py
muller/inheritance/genotype_ancestry.py
muller/inheritance/genotype_lineage.py
muller/inheritance/polygon.py
muller/inheritance/scoring.py
muller/inheritance/timepoint_detection.py