.coverage
.flake8
.gitignore
LICENSE
README.rst
pyproject.toml
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/CI.yml
.github/workflows/generate_pages.yml
.github/workflows/publish.yml
docs/Makefile
docs/make.bat
docs/source/api.rst
docs/source/conf.py
docs/source/index.rst
docs/source/logo.png
docs/source/_templates/custom-class-template.rst
docs/source/_templates/custom-module-template.rst
docs/source/development/development.rst
docs/source/development/index.rst
docs/source/user_guide/index.rst
docs/source/user_guide/installation.rst
docs/source/user_guide/library.rst
docs/source/user_guide/organisation.rst
docs/source/user_guide/performance.rst
docs/source/user_guide/quickstart.rst
docs/source/user_guide/usage.rst
docs/source/user_guide/templates/annotate.rst
docs/source/user_guide/templates/cellpose.rst
docs/source/user_guide/templates/cellpose_train.rst
docs/source/user_guide/templates/classic.rst
docs/source/user_guide/templates/get_markers.rst
docs/source/user_guide/templates/ilastik_output.rst
docs/source/user_guide/templates/ilastik_prep.rst
docs/source/user_guide/templates/index.rst
docs/source/user_guide/templates/membrane_performance.rst
docs/source/user_guide/templates/preprocess.rst
docs/yaml2rst/main.py
src/locpix/__init__.py
src/locpix.egg-info/PKG-INFO
src/locpix.egg-info/SOURCES.txt
src/locpix.egg-info/dependency_links.txt
src/locpix.egg-info/entry_points.txt
src/locpix.egg-info/requires.txt
src/locpix.egg-info/top_level.txt
src/locpix/evaluate/__init__.py
src/locpix/evaluate/metrics.py
src/locpix/img_processing/__init__.py
src/locpix/img_processing/render.py
src/locpix/img_processing/watershed.py
src/locpix/img_processing/data_loading/__init__.py
src/locpix/img_processing/data_loading/dataset.py
src/locpix/img_processing/data_loading/transforms.py
src/locpix/img_processing/training/__init__.py
src/locpix/img_processing/training/train.py
src/locpix/preprocessing/__init__.py
src/locpix/preprocessing/datastruc.py
src/locpix/preprocessing/functions.py
src/locpix/scripts/__init__.py
src/locpix/scripts/development/__init__.py
src/locpix/scripts/development/clean_up.py
src/locpix/scripts/img_seg/__init__.py
src/locpix/scripts/img_seg/cellpose_eval.py
src/locpix/scripts/img_seg/cellpose_eval_config.py
src/locpix/scripts/img_seg/cellpose_train.py
src/locpix/scripts/img_seg/classic.py
src/locpix/scripts/img_seg/classic_config.py
src/locpix/scripts/img_seg/get_markers.py
src/locpix/scripts/img_seg/get_markers_config.py
src/locpix/scripts/img_seg/ilastik_output.py
src/locpix/scripts/img_seg/ilastik_output_config.py
src/locpix/scripts/img_seg/ilastik_prep.py
src/locpix/scripts/img_seg/ilastik_prep_config.py
src/locpix/scripts/img_seg/membrane_performance.py
src/locpix/scripts/img_seg/membrane_performance_config.py
src/locpix/scripts/img_seg/stock_train.py
src/locpix/scripts/preprocessing/__init__.py
src/locpix/scripts/preprocessing/annotate.py
src/locpix/scripts/preprocessing/annotate_config.py
src/locpix/scripts/preprocessing/preprocess.py
src/locpix/scripts/preprocessing/preprocess_config.py
src/locpix/templates/__init__.py
src/locpix/templates/annotate.yaml
src/locpix/templates/cellpose.yaml
src/locpix/templates/cellpose_train.yaml
src/locpix/templates/classic.yaml
src/locpix/templates/get_markers.yaml
src/locpix/templates/ilastik_output.yaml
src/locpix/templates/ilastik_prep.yaml
src/locpix/templates/membrane_performance.yaml
src/locpix/templates/preprocess.yaml
src/locpix/visualise/__init__.py
src/locpix/visualise/performance.py
src/locpix/visualise/vis_img.py
tests/test_mock.py
tests/test_data/test_1.csv