.dockerignore
.gitignore
CHANGES.rst
LICENSE.md
MANIFEST.in
README.md
environment.yml
environment_2021-11-05.yml
environment_dev.yml
pyproject.toml
requirements.txt
requirements_2021-11-05.txt
requirements_dev.txt
setup.cfg
setup.py
docker/README.md
docker/deploy/Dockerfile
docker/testing/miniconda/Dockerfile
docker/testing/python/Dockerfile
docker/testing/python/Dockerfile_requirements
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
docs/_static/favicon.ico
docs/_static/logo.png
docs/_static/logo_plus.png
docs/_templates/autosummary/class.rst
docs/_templates/autosummary/module.rst
docs/source/changes_link.rst
docs/source/colormaps.rst
docs/source/command_line_interface.rst
docs/source/contributions.rst
docs/source/datastructures.rst
docs/source/design.rst
docs/source/development.rst
docs/source/docker_readme_link.md
docs/source/documentation.rst
docs/source/glossary.rst
docs/source/installation.rst
docs/source/introduction.rst
docs/source/license.rst
docs/source/metadata.rst
docs/source/methods.rst
docs/source/modules.rst
docs/source/properties.rst
docs/source/user_interface.rst
docs/tutorials/notebook_execution_table.md
docs/tutorials/tutorials.rst
docs/tutorials/notebooks/Analysis_Blinking.ipynb
docs/tutorials/notebooks/Analysis_Drift.ipynb
docs/tutorials/notebooks/Analysis_Ripley.ipynb
docs/tutorials/notebooks/Analysis_coordinate_based_colocalization.ipynb
docs/tutorials/notebooks/Analysis_example.ipynb
docs/tutorials/notebooks/Analysis_how_to_use_an_analysis_class.ipynb
docs/tutorials/notebooks/Analysis_localization_precision.ipynb
docs/tutorials/notebooks/Analysis_localization_property.ipynb
docs/tutorials/notebooks/Analysis_localizations_per_frame.ipynb
docs/tutorials/notebooks/Analysis_nearest_neighbor_distances.ipynb
docs/tutorials/notebooks/Analysis_pipeline.ipynb
docs/tutorials/notebooks/Cluster_LocData.ipynb
docs/tutorials/notebooks/Example Datasets.ipynb
docs/tutorials/notebooks/Filter_LocData.ipynb
docs/tutorials/notebooks/Load_LocData.ipynb
docs/tutorials/notebooks/LocData.ipynb
docs/tutorials/notebooks/LocData_hulls.ipynb
docs/tutorials/notebooks/Logging.ipynb
docs/tutorials/notebooks/Multiprocessing_with_ray.ipynb
docs/tutorials/notebooks/Regions.ipynb
docs/tutorials/notebooks/Render_LocData.ipynb
docs/tutorials/notebooks/Simulate_LocData.ipynb
docs/tutorials/notebooks/Track_LocData.ipynb
docs/tutorials/notebooks/Transform_LocData.ipynb
locan/__init__.py
locan/__main__.py
locan/_version.py
locan/constants.py
locan/datasets.py
locan.egg-info/PKG-INFO
locan.egg-info/SOURCES.txt
locan.egg-info/dependency_links.txt
locan.egg-info/entry_points.txt
locan.egg-info/not-zip-safe
locan.egg-info/requires.txt
locan.egg-info/top_level.txt
locan/analysis/__init__.py
locan/analysis/accumulation_analysis.py
locan/analysis/analysis_base.py
locan/analysis/analysis_example.py
locan/analysis/blinking.py
locan/analysis/cbc.py
locan/analysis/drift.py
locan/analysis/localization_precision.py
locan/analysis/localization_property.py
locan/analysis/localization_property_2d.py
locan/analysis/localization_property_correlations.py
locan/analysis/localizations_per_frame.py
locan/analysis/metadata_analysis.proto
locan/analysis/metadata_analysis_pb2.py
locan/analysis/nearest_neighbor.py
locan/analysis/pipeline.py
locan/analysis/ripley.py
locan/analysis/uncertainty.py
locan/data/__init__.py
locan/data/aggregate.py
locan/data/filter.py
locan/data/locdata.py
locan/data/metadata.proto
locan/data/metadata_pb2.py
locan/data/metadata_utils.py
locan/data/region.py
locan/data/region_utils.py
locan/data/register.py
locan/data/rois.py
locan/data/tracking.py
locan/data/cluster/__init__.py
locan/data/cluster/clustering.py
locan/data/cluster/utils.py
locan/data/hulls/__init__.py
locan/data/hulls/alpha_shape.py
locan/data/hulls/alpha_shape_2d.py
locan/data/hulls/hull.py
locan/data/properties/__init__.py
locan/data/properties/locdata_statistics.py
locan/data/properties/misc.py
locan/data/transform/__init__.py
locan/data/transform/bunwarpj.py
locan/data/transform/transformation.py
locan/gui/__init__.py
locan/gui/io.py
locan/io/__init__.py
locan/io/io_locdata.py
locan/licences/ASTROPY.rst
locan/licences/PANDAS.rst
locan/licences/PICASSO.rst
locan/licences/README.rst
locan/licences/SCIKIT-LEARN.rst
locan/render/__init__.py
locan/render/render2d.py
locan/render/utilities.py
locan/scripts/__init__.py
locan/scripts/script_check.py
locan/scripts/script_draw_roi.py
locan/scripts/script_napari.py
locan/scripts/script_rois.py
locan/scripts/script_show_versions.py
locan/scripts/script_test.py
locan/simulation/__init__.py
locan/simulation/simulate_drift.py
locan/simulation/simulate_locdata.py
locan/tests/__init__.py
locan/tests/conftest.py
locan/tests/test_constants.py
locan/tests/test_datasets.py
locan/tests/test_locan_init.py
locan/tests/test_locdata_io.py
locan/tests/test_simulation.py
locan/tests/analysis/__init__.py
locan/tests/analysis/test_accumulation_analysis.py
locan/tests/analysis/test_analysis_base.py
locan/tests/analysis/test_analysis_example.py
locan/tests/analysis/test_blinking.py
locan/tests/analysis/test_cbc.py
locan/tests/analysis/test_drift.py
locan/tests/analysis/test_localization_precision.py
locan/tests/analysis/test_localization_property.py
locan/tests/analysis/test_localization_property_2d.py
locan/tests/analysis/test_localization_property_correlations.py
locan/tests/analysis/test_localizations_per_frame.py
locan/tests/analysis/test_nearest_neighbor.py
locan/tests/analysis/test_pipeline.py
locan/tests/analysis/test_ripley.py
locan/tests/analysis/test_uncertainty.py
locan/tests/data/__init__.py
locan/tests/data/test_aggregate.py
locan/tests/data/test_alpha_shape.py
locan/tests/data/test_alpha_shape_2d.py
locan/tests/data/test_cluster.py
locan/tests/data/test_filter.py
locan/tests/data/test_hulls.py
locan/tests/data/test_locdata.py
locan/tests/data/test_properties_misc.py
locan/tests/data/test_properties_statistics.py
locan/tests/data/test_region.py
locan/tests/data/test_region_utils.py
locan/tests/data/test_register.py
locan/tests/data/test_rois.py
locan/tests/data/test_rois_legacy_0.py
locan/tests/data/test_track.py
locan/tests/data/test_transform.py
locan/tests/gui/__init__.py
locan/tests/gui/test_GUI_API.py
locan/tests/gui/test_gui_io.py
locan/tests/render/__init__.py
locan/tests/render/test_render2d.py
locan/tests/render/test_utilities.py
locan/tests/scripts/__init__.py
locan/tests/scripts/test_check.py
locan/tests/scripts/test_napari.py
locan/tests/scripts/test_rois.py
locan/tests/scripts/test_show_versions.py
locan/tests/test_data/Elyra_dstorm_data.txt
locan/tests/test_data/Nanoimager_dstorm_data.csv
locan/tests/test_data/Thunderstorm_dstorm_data.csv
locan/tests/test_data/five_blobs.txt
locan/tests/test_data/five_blobs_3D.txt
locan/tests/test_data/images.tif
locan/tests/test_data/rapidSTORM_dstorm_data.txt
locan/tests/test_data/rapidSTORM_from_images.txt
locan/tests/test_data/transform/BunwarpJ_transformation_elastic_green.txt
locan/tests/test_data/transform/BunwarpJ_transformation_raw_green.txt
locan/tests/test_data/transform/rapidSTORM_beads_green.txt
locan/tests/test_data/transform/rapidSTORM_beads_red.txt
locan/tests/utils/__init__.py
locan/tests/utils/test_format.py
locan/tests/utils/test_miscellaneous.py
locan/tests/utils/test_show_version.py
locan/utils/__init__.py
locan/utils/format.py
locan/utils/miscellaneous.py
locan/utils/system_information.py