Metadata-Version: 1.1
Name: limix
Version: 1.0.1
Summary: A flexible and fast mixed model toolbox.
Home-page: https://github.com/limix/limix
Author: Limix Developers
Author-email: horta@ebi.ac.uk
License: Apache License 2.0'
Description: Limix
        =====
        
        |PyPI-License| |PyPI-Version| |Documentation Status|
        
        Genomic analyses require flexible models that can be adapted to the
        needs of the user. Limix is a flexible and efficient linear mixed model
        library with interfaces to Python.
        
        Limix includes methods for - single-variant association and interaction
        testing, - variance decompostion analysis with linear mixed models, -
        association and interaction set tests, - as well as different utils for
        statistical analysis, basic i/o and plotting.
        
        A description of the public interface is found at
        https://limix.readthedocs.io/.
        
        iPython notebook tutorials are available from github repository:
        https://github.com/limix/limix-tutorials.
        
        These tutorials can also be viewed using the ipython notebook viewer:
        http://nbviewer.ipython.org/github/limix/limix-tutorials/blob/master/index.ipynb.
        
        Highlights
        ^^^^^^^^^^
        
        -  **iSet**: an interaction set test with external context
           (`paper <http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006693>`__)
           (`public interface <http://limix.readthedocs.io/iSet.html>`__)
           (`tutorial <https://github.com/limix/limix-tutorials/tree/master/iSet>`__)
        
        -  **mtSet**: an efficient multi-trait set test
           (`paper <http://www.nature.com/nmeth/journal/v12/n8/abs/nmeth.3439.html>`__)
           (`public interface <http://limix.readthedocs.io/mtSet.html>`__)
           (`tutorial <https://github.com/limix/limix-tutorials/tree/master/mtSet>`__)
        
        Install
        -------
        
        The recommended way of installing it is via
        `pip <https://pypi.python.org/pypi/pip>`__
        
        .. code:: bash
        
            pip install limix
        
        Problems
        --------
        
        If you encounter any issue, please, `submit
        it <https://github.com/limix/limix/issues>`__.
        
        Authors
        -------
        
        -  **Christoph Lippert** - https://github.com/clippert
        -  **Danilo Horta** - https://github.com/Horta
        -  **Franceso Paolo Casale** - https://github.com/fpcasale
        -  **Oliver Stegle** - https://github.com/ostegle
        
        License
        -------
        
        This project is licensed under the Apache License (Version 2.0, January
        2004) - see the `LICENSE <LICENSE>`__ file for details
        
        .. |PyPI-License| image:: https://img.shields.io/pypi/l/limix.svg?style=flat-square
           :target: https://pypi.python.org/pypi/limix/
        .. |PyPI-Version| image:: https://img.shields.io/pypi/v/limix.svg?style=flat-square
           :target: https://pypi.python.org/pypi/limix/
        .. |Documentation Status| image:: https://readthedocs.org/projects/limix/badge/?style=flat-square&version=latest
           :target: https://limix.readthedocs.io/
        
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
