LICENSE
README.md
setup.py
lifton/__init__.py
lifton/align.py
lifton/annotation.py
lifton/extract_sequence.py
lifton/get_id_fraction.py
lifton/intervals.py
lifton/lifton.py
lifton/lifton_class.py
lifton/lifton_utils.py
lifton/logger.py
lifton/protein_maximization.py
lifton/run_evaluation.py
lifton/run_liftoff.py
lifton/run_miniprot.py
lifton/stats.py
lifton/variants.py
lifton.egg-info/PKG-INFO
lifton.egg-info/SOURCES.txt
lifton.egg-info/dependency_links.txt
lifton.egg-info/entry_points.txt
lifton.egg-info/requires.txt
lifton.egg-info/top_level.txt
lifton/liftoff/__init__.py
lifton/liftoff/align_features.py
lifton/liftoff/aligned_seg.py
lifton/liftoff/extract_features.py
lifton/liftoff/feature_hierarchy.py
lifton/liftoff/find_best_mapping.py
lifton/liftoff/fix_overlapping_features.py
lifton/liftoff/lift_features.py
lifton/liftoff/liftoff_main.py
lifton/liftoff/liftoff_utils.py
lifton/liftoff/liftover_types.py
lifton/liftoff/merge_lifted_features.py
lifton/liftoff/new_feature.py
lifton/liftoff/polish.py
lifton/liftoff/write_new_gff.py
lifton/liftoff/tests/__init__.py
lifton/liftoff/tests/test_advanced.py
lifton/liftoff/tests/test_basic.py