.gitignore
.readthedocs.yml
LICENSE
README.md
requirements.txt
setup.py
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/main.yml
docs/Makefile
docs/make.bat
docs/source/api.rst
docs/source/conf.py
docs/source/index.rst
docs/source/installation.rst
docs/source/logo.png
docs/source/reference.rst
docs/source/release_notes.rst
docs/source/requirements.txt
docs/source/_static/custom.css
docs/source/notebooks/basic_usage.ipynb
docs/source/notebooks/liana_c2c.ipynb
docs/source/notebooks/mofacell.ipynb
docs/source/notebooks/mofatalk.ipynb
liana/__init__.py
liana.egg-info/PKG-INFO
liana.egg-info/SOURCES.txt
liana.egg-info/dependency_links.txt
liana.egg-info/requires.txt
liana.egg-info/top_level.txt
liana/funcomics/__init__.py
liana/funcomics/generate_lr_geneset.py
liana/method/_Method.py
liana/method/__init__.py
liana/method/_liana_pipe.py
liana/method/_pipe_utils/__init__.py
liana/method/_pipe_utils/_aggregate.py
liana/method/_pipe_utils/_get_mean_perms.py
liana/method/_pipe_utils/_pre.py
liana/method/_pipe_utils/_reassemble_complexes.py
liana/method/sc/__init__.py
liana/method/sc/_cellchat.py
liana/method/sc/_cellphonedb.py
liana/method/sc/_connectome.py
liana/method/sc/_geometric_mean.py
liana/method/sc/_logfc.py
liana/method/sc/_natmi.py
liana/method/sc/_rank_aggregate.py
liana/method/sc/_singlecellsignalr.py
liana/multi/__init__.py
liana/multi/_common.py
liana/multi/to_mudata.py
liana/multi/to_tensor_c2c.py
liana/plotting/__init__.py
liana/plotting/_dotplot.py
liana/resource/__init__.py
liana/resource/_resource_utils.py
liana/resource/_select_resource.py
liana/resource/omni_resource.csv
liana/testing/__init__.py
liana/testing/_sample_lrs.py
liana/testing/_toy_adata.py
liana/testing/datasets.py
liana/tests/__init__.py
liana/tests/test_funcomics.py
liana/tests/test_get_mean_perms.py
liana/tests/test_liana_pipe.py
liana/tests/test_methods.py
liana/tests/test_multi.py
liana/tests/test_plotting.py
liana/tests/test_pre.py
liana/tests/test_rank_aggregate.py
liana/tests/data/aggregate_rank_rest.csv
liana/tests/data/all_defaults.csv
liana/tests/data/not_defaults.csv