MANIFEST.in
README.md
setup.py
ld_estimator/__init__.py
ld_estimator/core.cpp
ld_estimator/linkage.py
ld_estimator/pairwise.cpp
ld_estimator/pairwise.pyx
ld_estimator/region.py
ld_estimator/site.py
ld_estimator/test.cpp
ld_estimator/utils.py
ld_estimator.egg-info/PKG-INFO
ld_estimator.egg-info/SOURCES.txt
ld_estimator.egg-info/dependency_links.txt
ld_estimator.egg-info/requires.txt
ld_estimator.egg-info/top_level.txt
src/af.cpp
src/af.h
src/confidence.cpp
src/confidence.h
src/dprime.cpp
src/dprime.h
src/flip.cpp
src/flip.h
src/frequencies.cpp
src/frequencies.h
src/haps.h
src/ld.cpp
src/ld.h
src/likelihoods.cpp
src/likelihoods.h
src/linkage.h
src/optimize.cpp
src/optimize.h
src/tallies.cpp
src/tallies.h
src/utils.cpp
src/utils.h
tests/__init__.py
tests/test_ld.py