from ._data_pipeline import make_pdb_features
from ._data_transforms import atom37_to_frames, get_backbone_frames, make_atom14_masks, make_atom14_positions
from ._fape import backbone_loss, compute_fape, make_default_alphafold_loss, sidechain_loss
from ._feats import atom14_to_atom37
from ._protein import Protein as OFProtein
from ._protein import from_pdb_string as protein_from_pdb_string
from ._residue_constants import make_atom14_dists_bounds
from ._rigids import Rigid, Rotation
from ._tensor_utils import (
    batched_gather,
    masked_mean,
    permute_final_dims,
    tensor_tree_map,
    tree_map,
)
