from ._calm_datamodule import CalmLightningDataModule
from ._chembl_datamodule import ChEMBLLightningDataModule
from ._collate import EsmBatchConverter, ESMBatchConverterPPI
from ._constants import ESM_MODEL_NAMES
from ._dataframe_dataset_in_memory import (
    DataFrameDatasetInMemory,
    DataFrameLightningDataModule,
)
from ._dyab_data import (
    DyAbDataFrameDatasetInMemory,
    DyAbDataFrameLightningDataModule,
)
from ._farthest_first_traversal import FarthestFirstTraversal, ranked_fft
from ._fasta_datamodule import FastaLightningDataModule
from ._m3_20m_datamodule import M320MLightningDataModule
from ._minhasher import LobsterMinHasher
from ._mmseqs import MMSeqsRunner
from ._structure_datamodule import PDBDataModule
from ._ume_datamodule import UmeLightningDataModule
from ._utils import download_from_s3, get_s3_bucket_and_key, load_pickle, upload_to_s3

__all__ = [
    "CalmLightningDataModule",
    "ChEMBLLightningDataModule",
    "EsmBatchConverter",
    "ESMBatchConverterPPI",
    "ESM_MODEL_NAMES",
    "DataFrameDatasetInMemory",
    "DataFrameLightningDataModule",
    "DyAbDataFrameDatasetInMemory",
    "DyAbDataFrameLightningDataModule",
    "FarthestFirstTraversal",
    "ranked_fft",
    "FastaLightningDataModule",
    "M320MLightningDataModule",
    "LobsterMinHasher",
    "MMSeqsRunner",
    "PDBDataModule",
    "load_pickle",
    "UmeLightningDataModule",
    "upload_to_s3",
    "download_from_s3",
    "get_s3_bucket_and_key",
]
