Metadata-Version: 2.4
Name: latch-curate
Version: 0.2.3
Summary: Tools for curating single cell data
Author-email: Kenny Workman <kenny@latch.bio>
Requires-Python: >=3.10
Requires-Dist: click==8.2.1
Requires-Dist: docker==7.1.0
Requires-Dist: geoparse==2.0.4
Requires-Dist: harmonypy==0.0.10
Requires-Dist: igraph==0.11.8
Requires-Dist: latch>=2.63.1
Requires-Dist: openai==1.81.0
Requires-Dist: pysradb==2.2.2
Requires-Dist: scanpy==1.11.1
Requires-Dist: scikit-image==0.25.2
Requires-Dist: tiktoken>=0.9.0
Description-Content-Type: text/markdown

latch-curate
===

## Quickstart

Create on directory for each curation project/dataset and run the following
commands in this project directory.

```
latch-curate download run <gse-id>
latch-curate construct-counts run
latch-curate qc run
latch-curate transform run
latch-curate type-cells run
latch-curate harmonize-metadata run
```
