LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
LAMAReg.egg-info/PKG-INFO
LAMAReg.egg-info/SOURCES.txt
LAMAReg.egg-info/dependency_links.txt
LAMAReg.egg-info/entry_points.txt
LAMAReg.egg-info/requires.txt
LAMAReg.egg-info/top_level.txt
lamareg/__init__.py
lamareg/cli.py
lamareg/SynthSeg/__init__.py
lamareg/SynthSeg/brain_generator.py
lamareg/SynthSeg/estimate_priors.py
lamareg/SynthSeg/evaluate.py
lamareg/SynthSeg/labels_to_image_model.py
lamareg/SynthSeg/metrics_model.py
lamareg/SynthSeg/model_handler.py
lamareg/SynthSeg/model_inputs.py
lamareg/SynthSeg/predict.py
lamareg/SynthSeg/predict_denoiser.py
lamareg/SynthSeg/predict_group.py
lamareg/SynthSeg/predict_qc.py
lamareg/SynthSeg/predict_synthseg.py
lamareg/SynthSeg/sample_segmentation_pairs_d.py
lamareg/SynthSeg/training.py
lamareg/SynthSeg/training_denoiser.py
lamareg/SynthSeg/training_group.py
lamareg/SynthSeg/training_qc.py
lamareg/SynthSeg/training_supervised.py
lamareg/SynthSeg/validate.py
lamareg/SynthSeg/validate_denoiser.py
lamareg/SynthSeg/validate_group.py
lamareg/SynthSeg/validate_qc.py
lamareg/ext/__init__.py
lamareg/ext/lab2im/__init__.py
lamareg/ext/lab2im/edit_tensors.py
lamareg/ext/lab2im/edit_volumes.py
lamareg/ext/lab2im/image_generator.py
lamareg/ext/lab2im/lab2im_model.py
lamareg/ext/lab2im/layers.py
lamareg/ext/lab2im/utils.py
lamareg/ext/neuron/__init__.py
lamareg/ext/neuron/layers.py
lamareg/ext/neuron/models.py
lamareg/ext/neuron/utils.py
lamareg/scripts/__init__.py
lamareg/scripts/apply_warp.py
lamareg/scripts/coregister.py
lamareg/scripts/dice_compare.py
lamareg/scripts/lamar.py
lamareg/scripts/synthseg.py
lamareg/scripts/data/labels_classes_priors/generation_classes.npy
lamareg/scripts/data/labels_classes_priors/generation_classes_contrast_specific.npy
lamareg/scripts/data/labels_classes_priors/generation_labels.npy
lamareg/scripts/data/labels_classes_priors/prior_means_t1.npy
lamareg/scripts/data/labels_classes_priors/prior_stds_t1.npy
lamareg/scripts/data/labels_classes_priors/synthseg_denoiser_labels_2.0.npy
lamareg/scripts/data/labels_classes_priors/synthseg_parcellation_labels.npy
lamareg/scripts/data/labels_classes_priors/synthseg_parcellation_names.npy
lamareg/scripts/data/labels_classes_priors/synthseg_qc_labels.npy
lamareg/scripts/data/labels_classes_priors/synthseg_qc_labels_2.0.npy
lamareg/scripts/data/labels_classes_priors/synthseg_qc_names.npy
lamareg/scripts/data/labels_classes_priors/synthseg_qc_names_2.0.npy
lamareg/scripts/data/labels_classes_priors/synthseg_segmentation_labels.npy
lamareg/scripts/data/labels_classes_priors/synthseg_segmentation_labels_2.0.npy
lamareg/scripts/data/labels_classes_priors/synthseg_segmentation_names.npy
lamareg/scripts/data/labels_classes_priors/synthseg_segmentation_names_2.0.npy
lamareg/scripts/data/labels_classes_priors/synthseg_topological_classes.npy
lamareg/scripts/data/labels_classes_priors/synthseg_topological_classes_2.0.npy
lamareg/utils/__init__.py
lamareg/utils/file_splitter.py
tests/test_full_pipeline.py