Metadata-Version: 2.1
Name: kSpider
Version: 1.0.2
Summary: kSpider sequence clustering software.
Home-page: https://github.com/mr-eyes/kSpider
Author: Mohamed Abuelanin (Nile University), Tamer Mansour (UC Davis)
Author-email: mabuelanin@gmail.com, drtamermansour@gmail.com
License: UNKNOWN
Project-URL: Bug Reports, https://github.com/mr-eyes/kSpider/issues
Project-URL: Say Thanks!, https://saythanks.io/to/mr-eyes
Project-URL: Source, https://github.com/mr-eyes/kSpider
Keywords: pairwise-similarity clustering
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: Click
Requires-Dist: kProcessor

# kSpider

<img src="kSpider.png" alt="kSpider" width="65%" height="65%">

## Clone kSpider

```sh
git clone https://github.com/mr-eyes/kSpider
cd kSpider
```

## Clone kProcessor
```bash
git clone https://github.com/dib-lab/Kprocessor --branch indexFusionGenes --single-branch kprocessor
cd kProcessor
make
cd ..
```

## Reproduce expirement 1 (kSpider Vs. CDHIT Benchmarking)

```bash
bash reproduce_exp1.sh
```

### After it's done (pwd=kSpider/exp1/)

#### Automate CDHIT Benchmarking (Parallel Processing [All Threads])

```bash
bash ../scripts/parallelize_comparison.sh
```

#### Visualize results

```bash
bash ../scripts/visualize.sh
```

