Metadata-Version: 2.1
Name: kSpider
Version: 1.0.1
Summary: kSpider sequence clustering software.
Home-page: https://github.com/mr-eyes/kSpider
Author: Mohamed Abuelanin (Nile University), Tamer Mansour (UC Davis)
Author-email: mabuelanin@gmail.com, drtamermansour@gmail.com
License: UNKNOWN
Project-URL: Bug Reports, https://github.com/mr-eyes/kSpider/issues
Project-URL: Say Thanks!, https://saythanks.io/to/mr-eyes
Project-URL: Source, https://github.com/mr-eyes/kSpider
Description: # kSpider
        
        <img src="kSpider.png" alt="kSpider" width="65%" height="65%">
        
        ## Clone kSpider
        
        ```sh
        git clone https://github.com/mr-eyes/kSpider
        cd kSpider
        ```
        
        ## Clone kProcessor
        ```bash
        git clone https://github.com/dib-lab/Kprocessor --branch indexFusionGenes --single-branch kprocessor
        cd kProcessor
        make
        cd ..
        ```
        
        ## Reproduce expirement 1 (kSpider Vs. CDHIT Benchmarking)
        
        ```bash
        bash reproduce_exp1.sh
        ```
        
        ### After it's done (pwd=kSpider/exp1/)
        
        #### Automate CDHIT Benchmarking (Parallel Processing [All Threads])
        
        ```bash
        bash ../scripts/parallelize_comparison.sh
        ```
        
        #### Visualize results
        
        ```bash
        bash ../scripts/visualize.sh
        ```
Keywords: pairwise-similarity clustering
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Python: >=3.6
Description-Content-Type: text/markdown
