Metadata-Version: 1.1
Name: kronos_pipeliner
Version: 2.2.0
Summary: A workflow assembler for genome analytics and informatics
Home-page: https://github.com/jtaghiyar/kronos
Author: M. Jafar Taghiyar
Author-email: jafar.taghiyar@gmail.com
License: MIT
Description: # Kronos 
        
        ## About
        
        A workflow assembler for genome analytics and informatics.
        
        ## Documentation
        
        Please refer to kronos documentation here: <http://kronos.readthedocs.org/en/latest/>
        
        ## Installation
        
        Using pip:
        
        ```
        pip install kronos_pipeliner
        ```
        
        ## Dependencies
        
        * [Python == 2.7.5](http://www.python.org)
        
        ### Python libraries
        
        * [ruffus == 2.4.1](http://www.ruffus.org.uk/)
        
        * [PyYaml == 3.11 ](http://pyyaml.org/)
        
        ### Optional Python Libraries
        
        For running on a cluster using `-b/--job_scheduler drmaa` you will need to install:
        
        * [drmaa-python == 0.7.6](http://drmaa-python.github.io)
        
        ## Questions and feedback
        
        Please use our [kronos google group](https://groups.google.com/forum/#!forum/kronos_pipeliner).
        
        ## Contact
        
        Jafar Taghiyar <jafar.taghiyar@gmail.com>.
        
        ## Change log
        
        ###2.2.0
        * each task in the configuration file now has its own _requirements_ entry in the _run_ subsection which takes precedence over the requirements listed in the _GENERAL_ section. This enables users to have different versions of the same requirements for different tasks.
        * interval file now takes precedence over the synchronization, i.e. if a task has an interval file, then it will not be synchronized with its predecessors. 
        * added support for floating point memory requests.
        * made all the merged files to store in a directory called _merge_.
        * username and version are automatically added to the config files when using _make_config_ command.
        * added a check to make sure that the input of the implicit merge node is always a list.
        * bug fixes.
        
        ###2.1.0
        * Kronos now uses multithreading instead of multiprocessing.
        
        ### 2.0.4
        * removed the limitation on the number of simultaneous jobs/pipelines.
        * added ```--no_prefix``` back to the input options of ```run``` command. 
        * minor bug fixes.
        
        ### 2.0.3
        First version released!
        
Keywords: pipeline workflow bioinformatics kronos
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
