README.md
pyproject.toml
setup.cfg
clinvar/src/build_variation_database.py
clinvar/src/clinvar_xml_parsing.py
clinvar/src/fetch_wt_and_mut_seqs.py
clinvar/src/filter_based_on_kinases.py
clinvar/src/make_sequence_dataframe.py
example/soderling_data/verify_results.py
example/toy/make_test_data.py
example/toy/run_model.py
kolossus/__init__.py
kolossus/extract.py
kolossus/kolossus.py
kolossus/main.py
kolossus/panel.py
kolossus.egg-info/PKG-INFO
kolossus.egg-info/SOURCES.txt
kolossus.egg-info/dependency_links.txt
kolossus.egg-info/entry_points.txt
kolossus.egg-info/requires.txt
kolossus.egg-info/top_level.txt
kolossus/aprkh_utils/__init__.py
kolossus/aprkh_utils/listops.py
kolossus/aprkh_utils/seqio.py
kolossus/aprkh_utils/stringops.py
kolossus/aprkh_utils/decorators/__init__.py
kolossus/aprkh_utils/decorators/batch_utils.py
kolossus/aprkh_utils/decorators/time_utils.py
kolossus/aprkh_utils/misc/__init__.py
kolossus/aprkh_utils/misc/codon_table.py
kolossus/models/Network.py
kolossus/models/__init__.py
kolossus/models/load_model.py
kolossus/utils/__init__.py
kolossus/utils/batch_utils.py
kolossus/utils/conditional_returns.py
kolossus/utils/parse_fasta.py
kolossus/utils/read_data.py
kolossus/utils/seq_to_embedding.py
kolossus/utils/seqops.py
kolossus/utils/warnings.py
kolossus/utils/write_fasta.py
logos/src/create_logos.py