Metadata-Version: 1.1
Name: kitsune
Version: 1.2.4
Summary: tools for finding an optimal kmer
Home-page: https://gitlab.com/natapol.por/ksiga
Author: Natapol Pornputtapong
Author-email: natapol.por@gmail.com
License: Apache 2.0
Description: kitsune
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        1. Kitsune
        +
        Kitsune is a toolkit for evaluate the lenght of optimal k-mer in dataset.
        
        2. Basics
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        Kitsune provides many methods to evaluate the amount of information by given k-mer.
        This quantitative measurement could be use to calculate the amount of need k-mer
        
        3. Installation
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        --
        a. install it throught pip
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        .................
        $pip install kitsune
        .................
        __
        4. Usage
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        --
        a. Calculate k-mer from CRE, ACF, and OFC value
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        .................
        $kitsune cre genome_fasta/* -ks 5 -ke 10
        $kitsune acf genome_fasta/* -ks 5 -ke 10
        $kitsune ocf genome_fasta/* -ks 5 -ke 10
        .................
        
        b. calculate deistance matrix
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        .................
        $kitsune matrix genome_fasta/* -ks 5 -ke 10
        .................
        --
Keywords: kitsune
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
