Metadata-Version: 1.1
Name: kitsune
Version: 1.0.0
Summary: tools for finding an optimal kmer
Home-page: https://gitlab.com/natapol.por/ksiga
Author: Natapol Pornputtapong
Author-email: natapol.por@gmail.com
License: Apache 2.0
Description: kitsune
        --------
        
        # Kitsune
        Kitsune is a toolkit for evaluate the lenght of optimal k-mer in dataset.
        
        ## Basics
        Kitsune provides many methods to evaluate the amount of information by given k-mer.
        This quantitative measurement could be use to calculate the amount of need k-mer
        
        ## Installation
        Clone the repository and install it throught pip
        ```
        pip install kitsune
        ```
        
        ## Usage
        
        ### Calculate k-mer from CRE, ACF, and OFC value
        Kitsune provides three commands for calculate an appropiate k-mer using CRE, ACF, and OCF.
        
        ```
        kitsune cre genome_fasta/* -ks 5 -ke 10
        kitsune acf genome_fasta/* -ks 5 -ke 10
        kitsune ocf genome_fasta/* -ks 5 -ke 10
        ```
        
Keywords: kitsune
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
