LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
docs/Makefile
docs/README.md
docs/img/concise_logo_text.jpg
docs/img/kipoi-workflow.png
docs/img/notebooks/comp_models.gv.png
docs/img/notebooks/simple_var_overlap.png
docs/img/notebooks/simple_var_region_generation.png
docs/site/img/concise_logo_text.jpg
docs/site/img/kipoi-workflow.png
docs/site/img/notebooks/comp_models.gv.png
docs/site/img/notebooks/simple_var_overlap.png
docs/site/img/notebooks/simple_var_region_generation.png
docs/sources/index.md
docs/sources/api/dataloader.md
docs/sources/api/install_.md
docs/sources/api/list_.md
docs/sources/api/metadata.md
docs/sources/api/model.md
docs/sources/api/pipeline.md
docs/sources/api/readers.md
docs/sources/api/sources.md
docs/sources/api/writers.md
docs/sources/contributing/01_Getting_started.md
docs/sources/contributing/02_Writing_model.yaml.md
docs/sources/contributing/03_Writing_dataloader.yaml.md
docs/sources/contributing/04_Writing_dataloader.py.md
docs/sources/contributing/05_Writing_model.py.md
docs/sources/contributing/06_dumping_models_programatically.md
docs/sources/tutorials/R-api.md
docs/sources/tutorials/composing_models.md
docs/sources/tutorials/contributing_models.md
docs/sources/tutorials/python-api.md
docs/sources/tutorials/tf_binding_models.md
docs/sources/using/01_Getting_started.md
docs/sources/using/03_Model_sources.md
docs/sources/using/04_Installing_on_OSX.md
docs/sources/using/R.md
docs/sources/using/cli.md
docs/sources/using/plugins.md
docs/sources/using/python.md
docs/templates/index.md
docs/templates/api/dataloader.md
docs/templates/api/metadata.md
docs/templates/api/model.md
docs/templates/api/pipeline.md
docs/templates/api/sources.md
docs/templates/contributing/01_Getting_started.md
docs/templates/contributing/02_Writing_model.yaml.md
docs/templates/contributing/03_Writing_dataloader.yaml.md
docs/templates/contributing/04_Writing_dataloader.py.md
docs/templates/contributing/05_Writing_model.py.md
docs/templates/contributing/06_dumping_models_programatically.md
docs/templates/using/01_Getting_started.md
docs/templates/using/03_Model_sources.md
docs/templates/using/04_Installing_on_OSX.md
docs/templates/using/R.md
docs/templates/using/cli.md
docs/templates/using/plugins.md
docs/templates/using/python.md
docs/theme_dir/img/concise_logo_text.jpg
docs/theme_dir/img/kipoi-workflow.png
docs/theme_dir/img/notebooks/comp_models.gv.png
docs/theme_dir/img/notebooks/simple_var_overlap.png
docs/theme_dir/img/notebooks/simple_var_region_generation.png
kipoi/__init__.py
kipoi/__main__.py
kipoi/components.py
kipoi/conda.py
kipoi/config.py
kipoi/data.py
kipoi/data_utils.py
kipoi/logging.conf
kipoi/metadata.py
kipoi/model.py
kipoi/pipeline.py
kipoi/plugin.py
kipoi/readers.py
kipoi/remote.py
kipoi/sources.py
kipoi/specs.py
kipoi/utils.py
kipoi/writers.py
kipoi.egg-info/PKG-INFO
kipoi.egg-info/SOURCES.txt
kipoi.egg-info/dependency_links.txt
kipoi.egg-info/entry_points.txt
kipoi.egg-info/not-zip-safe
kipoi.egg-info/requires.txt
kipoi.egg-info/top_level.txt
kipoi/cli/__init__.py
kipoi/cli/env.py
kipoi/cli/main.py
kipoi/cli/parser_utils.py
kipoi/cli/source_test.py
kipoi/external/__init__.py
kipoi/external/flatten_json.py
kipoi/external/related/__init__.py
kipoi/external/related/converters.py
kipoi/external/related/dispatchers.py
kipoi/external/related/fields.py
kipoi/external/related/mixins.py
kipoi/external/torch/__init__.py
kipoi/external/torch/data.py
kipoi/external/torch/sampler.py
kipoi/external/torchvision/__init__.py
kipoi/external/torchvision/dataset_utils.py
kipoi/model_template/README.md
kipoi/model_template/cookiecutter.json
kipoi/model_template/hooks/pre_gen_project.py
kipoi/model_template/{{cookiecutter.model_name}}/LICENSE
kipoi/model_template/{{cookiecutter.model_name}}/dataloader.py
kipoi/model_template/{{cookiecutter.model_name}}/dataloader.yaml
kipoi/model_template/{{cookiecutter.model_name}}/model.yaml
kipoi/model_template/{{cookiecutter.model_name}}/readme.md
kipoi/model_template/{{cookiecutter.model_name}}/{% if cookiecutter.model_type == 'custom' %}model.py{% endif %}
kipoi/model_template/{{cookiecutter.model_name}}/dataloader_files/x_transformer.pkl
kipoi/model_template/{{cookiecutter.model_name}}/dataloader_files/y_transformer.pkl
kipoi/model_template/{{cookiecutter.model_name}}/example_files/features.csv
kipoi/model_template/{{cookiecutter.model_name}}/example_files/targets.csv
kipoi/model_template/{{cookiecutter.model_name}}/model_files/model.json
kipoi/model_template/{{cookiecutter.model_name}}/model_files/model.pkl
kipoi/model_template/{{cookiecutter.model_name}}/model_files/weights.h5
kipoi/model_template/{{cookiecutter.model_name}}/model_files/weights.json