# Core dependencies
requests>=2.25.0
biopython>=1.78
neo4j>=4.4.0
pyyaml>=5.4.0
tqdm>=4.60.0
dataclasses-json>=0.5.0
pandas>=1.3.0
openpyxl>=3.0.0

# RAG System dependencies for phenotype prediction
sentence-transformers>=2.2.0
faiss-cpu>=1.7.4
numpy>=1.21.0

# Web application dependencies (optional)
flask>=3.0.0
flask-sqlalchemy>=3.0.0
flask-cors>=4.0.0
flask-mail>=0.9.1
email-validator>=2.1.0
jinja2>=3.1.0

# Additional utilities
python-dotenv>=1.0.0
