from .sequence import BaseSeq, DNASeq, RNASeq, AASeq
from .alignment import BaseAlignment
from .phylogenetics import PhyloTree
from .metabolite import BaseMetabolite

from .utils import (
    one_hot_dna,
    random_DNASeq,
    DNASeq_from_NCBI,
    seq_list_to_fasta,
    seq_list_from_fasta,
    remove_degenerate_seqs,
    percentage_identity,
    seq_from_fasta,
    alignment_from_fasta,
    multialign,
    calc_phylo_tree,
)


from .tables import DNA_VOCAB, RNA_VOCAB, AA_VOCAB, CODON_TABLE
