from .sequence import BaseSeq, DNASeq, RNASeq, AASeq
from .alignment import BaseAlignment
from .phylogenetics import PhyloTree
from .metabolite import BaseMetabolite

from .utils.one_hot_dna import one_hot_dna
from .utils.random_DNASeq import random_DNASeq
from .utils.DNASeq_from_NCBI import DNASeq_from_NCBI
from .utils.seq_list_to_fasta import seq_list_to_fasta
from .utils.seq_list_from_fasta import seq_list_from_fasta
from .utils.seq_from_fasta import seq_from_fasta
from .utils.alignment_from_fasta import alignment_from_fasta
from .utils.multialign import multialign
from .utils.calc_phylo_tree import calc_phylo_tree
from .utils.percentage_identity import percentage_identity
from .utils.remove_degenerate_seqs import remove_degenerate_seqs

from .tables import DNA_VOCAB, RNA_VOCAB, AA_VOCAB, CODON_TABLE
