.bumpversion.cfg
.cookiecutterrc
.coveragerc
.editorconfig
.pylintrc
.travis.yml
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
Janggu-visAbstract.png
LICENSE
MANIFEST.in
README.rst
appveyor.yml
jangguhex.png
setup.cfg
setup.py
tox.ini
ci/appveyor-bootstrap.py
ci/appveyor-download.py
ci/appveyor-with-compiler.cmd
ci/bootstrap.py
ci/templates/.travis.yml
ci/templates/appveyor.yml
docs/Janggu-visAbstract.png
docs/authors.rst
docs/changelog.rst
docs/commandline.rst
docs/conf.py
docs/contributing.rst
docs/coverage.png
docs/custom_scorer.rst
docs/dna_peak.png
docs/index.rst
docs/janggu_example.png
docs/janggu_main.png
docs/jangguhex.png
docs/readme.rst
docs/requirements.txt
docs/spelling_wordlist.txt
docs/storage.rst
docs/tutorial.rst
docs/reference/index.rst
docs/reference/janggu.data.rst
docs/reference/janggu.rst
src/examples/bedfile_examples.ipynb
src/examples/classify_bedregions.py
src/examples/classify_bedregions_hdf5.py
src/examples/classify_bedregions_w_keras.py
src/examples/classify_bedregions_w_reducedim.py
src/examples/classify_bedregions_w_view.py
src/examples/classify_fasta.py
src/examples/classify_nucleotide_sequences.ipynb
src/examples/example_input_importance.py
src/examples/example_variant_effect_prediction.py
src/examples/influence_first_order1.png
src/examples/influence_first_order2.png
src/examples/influence_first_order3.png
src/examples/influence_last_order1.png
src/examples/influence_last_order2.png
src/examples/influence_last_order3.png
src/examples/influence_mafk_example_order1.png
src/examples/influence_mafk_example_order3.png
src/examples/influence_oct4_example_order1.png
src/examples/influence_oct4_example_order3.png
src/examples/influence_order3.png
src/examples/plot_coverage.ipynb
src/examples/plot_coverage.py
src/examples/predicted_variant_effects_mafk.png
src/examples/predicted_variant_effects_oct4.png
src/examples/predicted_variant_effects_oct4_order1.png
src/examples/predicted_variant_effects_oct4_order3.png
src/examples/variant_effect_prediction.ipynb
src/examples/.ipynb_checkpoints/bedfile_examples-checkpoint.ipynb
src/examples/.ipynb_checkpoints/classify_nucleotide_sequences-checkpoint.ipynb
src/examples/.ipynb_checkpoints/plot_coverage-checkpoint.ipynb
src/examples/.ipynb_checkpoints/variant_effect_prediction-checkpoint.ipynb
src/examples/tf_results/evaluation/0137e15e6dda1431d89357389ea531d5/training.log
src/examples/tf_results/evaluation/03678bdac770912d698df1af5751e047/training.log
src/examples/tf_results/evaluation/6acf30da11d48d4d96ed0669bf3a52f4/training.log
src/examples/tf_results/evaluation/b9c6e5775f3bd16dd76f608e27e3a257/training.log
src/examples/tf_results/evaluation/dac9455abc86b920ae6a7b24e9ffa234/training.log
src/examples/tf_results/evaluation/e1b69b64b461b5cbb782f68dbaaa6e36/training.log
src/examples/tf_results/logs/janggu.log
src/examples/tf_results/models/0137e15e6dda1431d89357389ea531d5.h5
src/examples/tf_results/models/0137e15e6dda1431d89357389ea531d5.png
src/examples/tf_results/models/03678bdac770912d698df1af5751e047.h5
src/examples/tf_results/models/03678bdac770912d698df1af5751e047.png
src/examples/tf_results/models/6acf30da11d48d4d96ed0669bf3a52f4.h5
src/examples/tf_results/models/6acf30da11d48d4d96ed0669bf3a52f4.png
src/examples/tf_results/models/b9c6e5775f3bd16dd76f608e27e3a257.h5
src/examples/tf_results/models/b9c6e5775f3bd16dd76f608e27e3a257.png
src/examples/tf_results/models/dac9455abc86b920ae6a7b24e9ffa234.h5
src/examples/tf_results/models/dac9455abc86b920ae6a7b24e9ffa234.png
src/examples/tf_results/models/e1b69b64b461b5cbb782f68dbaaa6e36.h5
src/examples/tf_results/models/e1b69b64b461b5cbb782f68dbaaa6e36.png
src/examples/tf_results/vcfoutput/scores.hdf5
src/examples/tf_results/vcfoutput/snps.bed.gzip
src/janggu/__init__.py
src/janggu/__main__.py
src/janggu/cli.py
src/janggu/decorators.py
src/janggu/evaluation.py
src/janggu/janggutrim.py
src/janggu/layers.py
src/janggu/losses.py
src/janggu/model.py
src/janggu/utils.py
src/janggu/version.py
src/janggu.egg-info/PKG-INFO
src/janggu.egg-info/SOURCES.txt
src/janggu.egg-info/dependency_links.txt
src/janggu.egg-info/entry_points.txt
src/janggu.egg-info/not-zip-safe
src/janggu.egg-info/requires.txt
src/janggu.egg-info/top_level.txt
src/janggu/data/__init__.py
src/janggu/data/coverage.py
src/janggu/data/data.py
src/janggu/data/dna.py
src/janggu/data/genomic_indexer.py
src/janggu/data/genomicarray.py
src/janggu/data/nparr.py
src/janggu/resources/10regions.bed
src/janggu/resources/bed_test.bed
src/janggu/resources/positive.bed
src/janggu/resources/positive_gap.bed
src/janggu/resources/positive_shift.bed
src/janggu/resources/pseudo_genome.fa
src/janggu/resources/pseudo_snps.vcf
src/janggu/resources/region_w_strand.bed
src/janggu/resources/roi.bed
src/janggu/resources/roi_test.bed
src/janggu/resources/roi_train.bed
src/janggu/resources/sacCer3.chrom.sizes
src/janggu/resources/sample.bam
src/janggu/resources/sample.bam.bai
src/janggu/resources/sample.bed
src/janggu/resources/sample.bw
src/janggu/resources/sample.chrom.sizes
src/janggu/resources/sample.csv
src/janggu/resources/sample.fa
src/janggu/resources/sample.gtf
src/janggu/resources/sample.vcf
src/janggu/resources/sample2.bam
src/janggu/resources/sample2.bam.bai
src/janggu/resources/sample2.fa
src/janggu/resources/sample2_test.fa
src/janggu/resources/sample_equalsize.bed
src/janggu/resources/sample_genome.fa
src/janggu/resources/sample_protein.fa
src/janggu/resources/sample_test.fa
src/janggu/resources/scored_region.bed
src/janggu/resources/scored_sample.bed
src/janggu/resources/scores.bed
tests/__init__.py
tests/test_convertion.py
tests/test_coverage.py
tests/test_data.py
tests/test_decorators.py
tests/test_dna_dataset.py
tests/test_evaluation.py
tests/test_genomicarray.py
tests/test_gindexer.py
tests/test_janggo.py
tests/test_janggu_trim.py
tests/test_nparr.py
tests/test_utils.py