README.md
setup.py
isovar/__init__.py
isovar/alignment_score.py
isovar/allele_read.py
isovar/allele_read_helpers.py
isovar/assembly.py
isovar/common.py
isovar/dataframe_builder.py
isovar/dataframe_helpers.py
isovar/default_parameters.py
isovar/dna.py
isovar/effect_prediction.py
isovar/filtering.py
isovar/genetic_code.py
isovar/isovar_result.py
isovar/locus_read.py
isovar/logging.conf
isovar/logging.py
isovar/main.py
isovar/phasing.py
isovar/protein_sequence.py
isovar/protein_sequence_creator.py
isovar/protein_sequence_helpers.py
isovar/read_collector.py
isovar/read_evidence.py
isovar/reference_coding_sequence_key.py
isovar/reference_context.py
isovar/reference_context_helpers.py
isovar/reference_sequence_key.py
isovar/string_helpers.py
isovar/translation.py
isovar/translation_helpers.py
isovar/translation_key.py
isovar/value_object.py
isovar/variant_helpers.py
isovar/variant_orf.py
isovar/variant_orf_helpers.py
isovar/variant_sequence.py
isovar/variant_sequence_creator.py
isovar/variant_sequence_helpers.py
isovar.egg-info/PKG-INFO
isovar.egg-info/SOURCES.txt
isovar.egg-info/dependency_links.txt
isovar.egg-info/entry_points.txt
isovar.egg-info/requires.txt
isovar.egg-info/top_level.txt
isovar/cli/__init__.py
isovar/cli/filter_args.py
isovar/cli/isovar_allele_counts.py
isovar/cli/isovar_allele_reads.py
isovar/cli/isovar_main.py
isovar/cli/isovar_protein_sequences.py
isovar/cli/isovar_reference_contexts.py
isovar/cli/isovar_translations.py
isovar/cli/isovar_variant_reads.py
isovar/cli/isovar_variant_sequences.py
isovar/cli/main_args.py
isovar/cli/output_args.py
isovar/cli/protein_sequence_args.py
isovar/cli/reference_context_args.py
isovar/cli/rna_args.py
isovar/cli/translation_args.py
isovar/cli/variant_sequences_args.py
test/test_alignment_score.py
test/test_allele_counts.py
test/test_allele_reads.py
test/test_argparser_helpers.py
test/test_assembly.py
test/test_cli.py
test/test_dataframe_builder.py
test/test_dna_helpers.py
test/test_effect_prediction.py
test/test_filtering.py
test/test_gather_variant_reads_wgs.py
test/test_genetic_code.py
test/test_isovar_result.py
test/test_locus_reads.py
test/test_main.py
test/test_mutant_amino_acids_in_protein_sequence.py
test/test_protein_sequences.py
test/test_read_helpers.py
test/test_reference_coding_sequence_key.py
test/test_reference_contexts.py
test/test_reference_sequence_key.py
test/test_somatic_variant_with_0_supporting_rna_reads.py
test/test_somatic_variant_with_2_supporting_rna_reads.py
test/test_translation.py
test/test_value_object.py
test/test_variant_helpers.py
test/test_variant_orf.py
test/test_variant_reads_with_dummy_samfile.py
test/test_variant_sequences.py
test/testing_helpers.py