setup.py
isovar/__init__.py
isovar/allele_counts.py
isovar/allele_reads.py
isovar/assembly.py
isovar/common.py
isovar/compact_object.py
isovar/dataframe_builder.py
isovar/default_parameters.py
isovar/dna.py
isovar/effect_prediction.py
isovar/genetic_code.py
isovar/locus_reads.py
isovar/nucleotide_counts.py
isovar/protein_sequences.py
isovar/read_helpers.py
isovar/reference_coding_sequence_key.py
isovar/reference_context.py
isovar/reference_sequence_key.py
isovar/string_helpers.py
isovar/translation.py
isovar/variant_helpers.py
isovar/variant_reads.py
isovar/variant_sequence_in_reading_frame.py
isovar/variant_sequences.py
isovar.egg-info/PKG-INFO
isovar.egg-info/SOURCES.txt
isovar.egg-info/dependency_links.txt
isovar.egg-info/pbr.json
isovar.egg-info/requires.txt
isovar.egg-info/top_level.txt
isovar/cli/__init__.py
isovar/cli/logging.conf
isovar/cli/protein_sequences.py
isovar/cli/reference_context.py
isovar/cli/rna_reads.py
isovar/cli/translation.py
isovar/cli/variant_sequences.py
script/isovar-allele-counts.py
script/isovar-allele-reads.py
script/isovar-protein-sequences.py
script/isovar-reference-contexts.py
script/isovar-translations.py
script/isovar-variant-reads.py
script/isovar-variant-sequences.py
test/test_allele_counts.py
test/test_allele_reads.py
test/test_argparser_helpers.py
test/test_assembly.py
test/test_dataframe_builder.py
test/test_dna_helpers.py
test/test_gather_variant_reads_wgs.py
test/test_genetic_code.py
test/test_locus_reads.py
test/test_mutant_amino_acids_in_protein_sequence.py
test/test_nucleotide_counts.py
test/test_protein_sequences.py
test/test_read_helpers.py
test/test_reference_coding_sequence_key.py
test/test_reference_contexts.py
test/test_reference_sequence_key.py
test/test_somatic_variant_with_0_supporting_rna_reads.py
test/test_somatic_variant_with_2_supporting_rna_reads.py
test/test_translation.py
test/test_variant_helpers.py
test/test_variant_reads_with_dummy_samfile.py
test/test_variant_sequence_in_reading_frame.py
test/test_variant_sequences.py
test/testing_helpers.py