# Isotope Documentation

Welcome to the Isotope documentation.

## Quick Links

- [Getting Started Tutorial](./tutorials/getting-started.md) - Your first 10 minutes
- [CLI Reference](./guides/cli.md) - Command-line interface
- [Configuration Guide](./guides/configuration.md) - All settings and environment variables

## Concepts

Understanding the theory behind Isotope:

- [Reverse RAG Explained](./concepts/reverse-rag.md) - The paper (arXiv:2405.12363) and core insight
- [Architecture](./concepts/architecture.md) - System design, `Isotope` class, and pipelines

## Guides

How-to guides for specific tasks:

- [CLI Reference](./guides/cli.md) - Command-line usage (`isotope ingest`, `query`, etc.)
- [Configuration](./guides/configuration.md) - Environment variables, providers, settings
- [Atomization](./guides/atomization.md) - Choosing between sentence and LLM strategies

## Tutorials

Step-by-step learning:

- [Getting Started](./tutorials/getting-started.md) - Ingest and query your first document

## Additional Resources

- [README](../README.md) - Project overview and quick start
- [AGENTS.md](../AGENTS.md) - Guidelines for AI coding assistants
