LICENSE
MANIFEST.in
README.md
VERSION
changelog.md
isoquant.py
isoquant_detect_barcodes.py
isoquant_visualize.py
pyproject.toml
requirements.txt
requirements_tests.txt
isoquant.egg-info/PKG-INFO
isoquant.egg-info/SOURCES.txt
isoquant.egg-info/dependency_links.txt
isoquant.egg-info/entry_points.txt
isoquant.egg-info/requires.txt
isoquant.egg-info/top_level.txt
isoquant_lib/__init__.py
isoquant_lib/alignment_info.py
isoquant_lib/alignment_processor.py
isoquant_lib/assignment_aggregator.py
isoquant_lib/assignment_io.py
isoquant_lib/assignment_loader.py
isoquant_lib/cage_finder.py
isoquant_lib/common.py
isoquant_lib/convert_grouped_counts.py
isoquant_lib/correction_stats.py
isoquant_lib/dataset_processor.py
isoquant_lib/error_codes.py
isoquant_lib/exon_corrector.py
isoquant_lib/file_naming.py
isoquant_lib/file_utils.py
isoquant_lib/gene_info.py
isoquant_lib/gene_model.py
isoquant_lib/graph_based_model_construction.py
isoquant_lib/gtf2db.py
isoquant_lib/id_policy.py
isoquant_lib/illumina_exon_corrector.py
isoquant_lib/input_data_storage.py
isoquant_lib/intron_graph.py
isoquant_lib/isoform_assignment.py
isoquant_lib/junction_comparator.py
isoquant_lib/long_read_assigner.py
isoquant_lib/long_read_counter.py
isoquant_lib/long_read_profiles.py
isoquant_lib/modes.py
isoquant_lib/multimap_resolver.py
isoquant_lib/parallel_workers.py
isoquant_lib/plot_output.py
isoquant_lib/polya_finder.py
isoquant_lib/polya_verification.py
isoquant_lib/post_process.py
isoquant_lib/process_dict.py
isoquant_lib/processed_read_manager.py
isoquant_lib/read_groups.py
isoquant_lib/read_mapper.py
isoquant_lib/serialization.py
isoquant_lib/short_reads.py
isoquant_lib/short_utils.py
isoquant_lib/stats.py
isoquant_lib/string_pools.py
isoquant_lib/table_splitter.py
isoquant_lib/transcript_printer.py
isoquant_lib/barcode_calling/__init__.py
isoquant_lib/barcode_calling/common.py
isoquant_lib/barcode_calling/detect_barcodes.py
isoquant_lib/barcode_calling/umi_filtering.py
isoquant_lib/barcode_calling/callers/__init__.py
isoquant_lib/barcode_calling/callers/base.py
isoquant_lib/barcode_calling/callers/curio.py
isoquant_lib/barcode_calling/callers/extraction_result.py
isoquant_lib/barcode_calling/callers/molecule_structure.py
isoquant_lib/barcode_calling/callers/protocol.py
isoquant_lib/barcode_calling/callers/stereo.py
isoquant_lib/barcode_calling/callers/tenx.py
isoquant_lib/barcode_calling/callers/universal_extraction.py
isoquant_lib/barcode_calling/indexers/__init__.py
isoquant_lib/barcode_calling/indexers/base.py
isoquant_lib/barcode_calling/indexers/shared_memory.py
isoquant_lib/barcode_calling/indexers/two_bit.py
isoquant_lib/test_data/chr9.4M.fa.gz
isoquant_lib/test_data/chr9.4M.gtf.gz
isoquant_lib/test_data/chr9.4M.ont.sim.fq.gz