Metadata-Version: 2.1
Name: isolearn
Version: 0.2
Summary: Keras Genomics Data Generators
Home-page: https://github.com/johli/isolearn
Author: Johannes Linder
Author-email: johannes.linder@hotmail.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent

# Isolearn

Automated loading and processing of genomics data for use in deep learning models (Keras).
Implements Keras data generators for loading and encoding Pandas dataframes and RNA-Seq count matrices into numerical tensors.

## Example Notebooks (Alternative Splicing)
[Notebook 1a: Logistic Regression of Sequence Hexamer Counts](https://nbviewer.jupyter.org/github/johli/isolearn/blob/master/example/splicing_hexamer_regression.ipynb)<br/>
[Notebook 1b: Logistic Regression of Sequence Hexamer Counts (Multiple Cell Types)](https://nbviewer.jupyter.org/github/johli/isolearn/blob/master/example/splicing_hexamer_regression_multicell.ipynb)<br/>
[Notebook 2a: (Keras) Sequence-Convolutional Neural Network](https://nbviewer.jupyter.org/github/johli/isolearn/blob/master/example/splicing_cnn_multicell.ipynb)<br/>
[Notebook 2b: (Keras) Sequence-Convolutional Neural Network (Sampled Splice Junctions)](https://nbviewer.jupyter.org/github/johli/isolearn/blob/master/example/splicing_cnn_perturbed_multicell.ipynb)<br/>



