LICENSE.txt
README.md
setup.cfg
setup.py
isatools/__init__.py
isatools/__main__.py
isatools/constants.py
isatools/isajson.py
isatools/isatab.py
isatools/logging.py
isatools/magetab.py
isatools/model.py
isatools/sampletab.py
isatools/sra.py
isatools/utils.py
isatools.egg-info/PKG-INFO
isatools.egg-info/SOURCES.txt
isatools.egg-info/dependency_links.txt
isatools.egg-info/requires.txt
isatools.egg-info/top_level.txt
isatools/convert/__init__.py
isatools/convert/isatab2cedar.py
isatools/convert/isatab2json.py
isatools/convert/isatab2magetab.py
isatools/convert/isatab2sampletab.py
isatools/convert/isatab2sra.py
isatools/convert/isatab2w4m.py
isatools/convert/json2isatab.py
isatools/convert/json2magetab.py
isatools/convert/json2sampletab.py
isatools/convert/json2sra.py
isatools/convert/magetab2isatab.py
isatools/convert/magetab2json.py
isatools/convert/mzml2isa.py
isatools/convert/sampletab2isatab.py
isatools/convert/sampletab2json.py
isatools/create/__init__.py
isatools/create/assay_templates.py
isatools/create/connectors.py
isatools/create/constants.py
isatools/create/errors.py
isatools/create/model.py
isatools/errors/__init__.py
isatools/io/__init__.py
isatools/io/isatab_configurator.py
isatools/io/isatab_parser.py
isatools/net/__init__.py
isatools/net/ax.py
isatools/net/biocrates2isatab.py
isatools/net/mtbls.py
isatools/net/mw2isa.py
isatools/net/ols.py
isatools/net/pubmed.py
isatools/net/sra2isatab.py
isatools/net/storage_adapter.py
isatools/net/resources/biocrates/2014-07-15_Conc.xml
isatools/net/resources/biocrates/Biocrates-export.xsd
isatools/net/resources/biocrates/Conc_R100028_export_incl_information_20200309.xml
isatools/net/resources/biocrates/ISA-Team-Biocrates2ISA-CV-mapping.xml
isatools/net/resources/biocrates/ISA-Team-Biocrates2ISATAB-refactor.xsl
isatools/net/resources/biocrates/ISA-Team-Biocrates2ISATAB.xsl
isatools/net/resources/biocrates/ISA-Team-Biocrates2MAF.xsl
isatools/net/resources/biocrates/ISA-Team-Biocrates2MAFv2.xsl
isatools/net/resources/biocrates/MouseMetabolomicsProject5.xml
isatools/net/resources/biocrates/biocrates-merge.py
isatools/net/resources/biocrates/biocrates-merged-output.xml
isatools/net/resources/biocrates/biocrates-shorter-testfile.xml
isatools/net/resources/biocrates/m_MTBLSXXX_BiocratesP180_metabolite_profiling_v2_maf.txt
isatools/net/resources/biocrates/m_MTBLSXXX_BiocratesP400_metabolite_profiling_v2_maf.txt
isatools/net/resources/biocrates/output.xml
isatools/net/resources/biocrates/readme-sampleToTablePy.txt
isatools/net/resources/biocrates/test.xsl
isatools/net/resources/sra/blank.xml
isatools/net/resources/sra/extract-studies-rice.xsl
isatools/net/resources/sra/extract-studies.xsl
isatools/net/resources/sra/isa-functions.xsl
isatools/net/resources/sra/sra-embl-online2isatab-txt.xsl
isatools/net/resources/sra/sra-isa-measurement_type_mapping.xml
isatools/net/resources/sra/sra-study-embl-online2isatab-OLD.xsl
isatools/net/resources/sra/sra-study-embl-online2isatab.xsl
isatools/net/resources/sra/sra-submission-embl-online2isatab-txt-OLD.xsl
isatools/net/resources/sra/sra-submission-embl-online2isatab-txt.xsl
isatools/resources/isatools.ini
isatools/resources/config/json/default/cellcount_flowcytometry.json
isatools/resources/config/json/default/cellsorting_flowcytometry.json
isatools/resources/config/json/default/copynumvariation_micro.json
isatools/resources/config/json/default/dnamethylation_micro.json
isatools/resources/config/json/default/dnamethylation_sql.json
isatools/resources/config/json/default/envgen_survey.json
isatools/resources/config/json/default/genome_seq.json
isatools/resources/config/json/default/hematology.json
isatools/resources/config/json/default/heterozygosity_micro.json
isatools/resources/config/json/default/histology.json
isatools/resources/config/json/default/histonemodification_seq.json
isatools/resources/config/json/default/metaboliteprofiling_ms.json
isatools/resources/config/json/default/metaboliteprofiling_nmr.json
isatools/resources/config/json/default/metagenome_seq.json
isatools/resources/config/json/default/metagenome_seq_config.json
isatools/resources/config/json/default/ppi_detection_micro.json
isatools/resources/config/json/default/protein_dna_binding_ident_seq.json
isatools/resources/config/json/default/protein_expression_micro.json
isatools/resources/config/json/default/protein_expression_ms.json
isatools/resources/config/json/default/proteinident_ms.json
isatools/resources/config/json/default/snpanalysis_micro.json
isatools/resources/config/json/default/study_config.json
isatools/resources/config/json/default/tfbident_seq.json
isatools/resources/config/json/default/tfbsident_micro.json
isatools/resources/config/json/default/transcription_micro.json
isatools/resources/config/json/default/transcription_rtpcr.json
isatools/resources/config/json/default/transcription_seq_config.json
isatools/resources/config/json/default/schemas/assay_schema.json
isatools/resources/config/json/default/schemas/comment_schema.json
isatools/resources/config/json/default/schemas/data_schema.json
isatools/resources/config/json/default/schemas/factor_schema.json
isatools/resources/config/json/default/schemas/factor_value_schema.json
isatools/resources/config/json/default/schemas/investigation_schema.json
isatools/resources/config/json/default/schemas/material_attribute_schema.json
isatools/resources/config/json/default/schemas/material_attribute_value_schema.json
isatools/resources/config/json/default/schemas/material_schema.json
isatools/resources/config/json/default/schemas/ontology_annotation_schema.json
isatools/resources/config/json/default/schemas/ontology_source_reference_schema.json
isatools/resources/config/json/default/schemas/organization_schema.json
isatools/resources/config/json/default/schemas/person_schema.json
isatools/resources/config/json/default/schemas/process_parameter_value_schema.json
isatools/resources/config/json/default/schemas/process_schema.json
isatools/resources/config/json/default/schemas/protocol_parameter_schema.json
isatools/resources/config/json/default/schemas/protocol_schema.json
isatools/resources/config/json/default/schemas/publication_schema.json
isatools/resources/config/json/default/schemas/sample_schema.json
isatools/resources/config/json/default/schemas/source_schema.json
isatools/resources/config/json/default/schemas/study_schema.json
isatools/resources/config/json/sra/genome_seq.json
isatools/resources/config/json/sra/schemas/assay_schema.json
isatools/resources/config/json/sra/schemas/comment_schema.json
isatools/resources/config/json/sra/schemas/data_schema.json
isatools/resources/config/json/sra/schemas/factor_schema.json
isatools/resources/config/json/sra/schemas/factor_value_schema.json
isatools/resources/config/json/sra/schemas/investigation_schema.json
isatools/resources/config/json/sra/schemas/material_attribute_schema.json
isatools/resources/config/json/sra/schemas/material_attribute_value_schema.json
isatools/resources/config/json/sra/schemas/material_schema.json
isatools/resources/config/json/sra/schemas/ontology_annotation_schema.json
isatools/resources/config/json/sra/schemas/ontology_source_reference_schema.json
isatools/resources/config/json/sra/schemas/organization_schema.json
isatools/resources/config/json/sra/schemas/person_schema.json
isatools/resources/config/json/sra/schemas/process_parameter_value_schema.json
isatools/resources/config/json/sra/schemas/process_schema.json
isatools/resources/config/json/sra/schemas/protocol_parameter_schema.json
isatools/resources/config/json/sra/schemas/protocol_schema.json
isatools/resources/config/json/sra/schemas/publication_schema.json
isatools/resources/config/json/sra/schemas/sample_schema.json
isatools/resources/config/json/sra/schemas/source_schema.json
isatools/resources/config/json/sra/schemas/study_schema.json
isatools/resources/config/xml/cellcount_flowcytometry.xml
isatools/resources/config/xml/cellsorting_flowcyt.xml
isatools/resources/config/xml/clinical_chemistry.xml
isatools/resources/config/xml/copynumvariation_micro.xml
isatools/resources/config/xml/dnamethylation_micro.xml
isatools/resources/config/xml/dnamethylation_seq.xml
isatools/resources/config/xml/envgen_survey_seq.xml
isatools/resources/config/xml/genome_seq.xml
isatools/resources/config/xml/hematology.xml
isatools/resources/config/xml/heterozygosity_micro.xml
isatools/resources/config/xml/histology.xml
isatools/resources/config/xml/histonemodification_seq.xml
isatools/resources/config/xml/investigation.xml
isatools/resources/config/xml/metaboliteprofiling_ms.xml
isatools/resources/config/xml/metaboliteprofiling_nmr.xml
isatools/resources/config/xml/metagenome_seq.xml
isatools/resources/config/xml/ppi_detection_micro.xml
isatools/resources/config/xml/protein_dna_binding_ident_micro.xml
isatools/resources/config/xml/protein_dna_binding_ident_seq.xml
isatools/resources/config/xml/protein_expression_ge.xml
isatools/resources/config/xml/protein_expression_micro.xml
isatools/resources/config/xml/protein_expression_ms.xml
isatools/resources/config/xml/proteinident_ms.xml
isatools/resources/config/xml/snpanalysis_micro.xml
isatools/resources/config/xml/studySample.xml
isatools/resources/config/xml/tfbsident_micro.xml
isatools/resources/config/xml/tfbsident_seq.xml
isatools/resources/config/xml/transcription_micro.xml
isatools/resources/config/xml/transcription_rtpcr.xml
isatools/resources/config/xml/transcription_seq.xml
isatools/resources/config/yaml/assay-options.yml
isatools/resources/config/yaml/protocol-types.yml
isatools/resources/config/yaml/study-creator-config.yml
isatools/resources/schemas/cedar/investigation_template.json
isatools/resources/schemas/configs/envgen_survey.json
isatools/resources/schemas/configs/metagenome_seq_config.json
isatools/resources/schemas/configs/study_config.json
isatools/resources/schemas/configs/transcription_seq_config.json
isatools/resources/schemas/configs/schemas/assay_schema.json
isatools/resources/schemas/configs/schemas/comment_schema.json
isatools/resources/schemas/configs/schemas/data_schema.json
isatools/resources/schemas/configs/schemas/factor_schema.json
isatools/resources/schemas/configs/schemas/factor_value_schema.json
isatools/resources/schemas/configs/schemas/investigation_schema.json
isatools/resources/schemas/configs/schemas/material_attribute_schema.json
isatools/resources/schemas/configs/schemas/material_attribute_value_schema.json
isatools/resources/schemas/configs/schemas/material_schema.json
isatools/resources/schemas/configs/schemas/ontology_annotation_schema.json
isatools/resources/schemas/configs/schemas/ontology_source_reference_schema.json
isatools/resources/schemas/configs/schemas/organization_schema.json
isatools/resources/schemas/configs/schemas/person_schema.json
isatools/resources/schemas/configs/schemas/process_parameter_value_schema.json
isatools/resources/schemas/configs/schemas/process_schema.json
isatools/resources/schemas/configs/schemas/protocol_parameter_schema.json
isatools/resources/schemas/configs/schemas/protocol_schema.json
isatools/resources/schemas/configs/schemas/publication_schema.json
isatools/resources/schemas/configs/schemas/sample_schema.json
isatools/resources/schemas/configs/schemas/source_schema.json
isatools/resources/schemas/configs/schemas/study_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/assay_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/comment_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/data_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/factor_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/factor_value_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/investigation_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/material_attribute_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/material_attribute_value_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/material_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/ontology_annotation_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/ontology_source_reference_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/organization_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/person_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/process_parameter_value_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/process_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/protocol_parameter_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/protocol_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/publication_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/sample_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/source_schema.json
isatools/resources/schemas/isa_model_version_1_0_schemas/core/study_schema.json
isatools/resources/sra_schemas/ENA.project.xsd
isatools/resources/sra_schemas/SRA.analysis.xsd
isatools/resources/sra_schemas/SRA.common.xsd
isatools/resources/sra_schemas/SRA.experiment.xsd
isatools/resources/sra_schemas/SRA.run.xsd
isatools/resources/sra_schemas/SRA.sample.xsd
isatools/resources/sra_schemas/SRA.submission.xsd
isatools/resources/sra_templates/experiment.xml
isatools/resources/sra_templates/experiment_library_descriptor.xml
isatools/resources/sra_templates/experiment_set.xml
isatools/resources/sra_templates/experiment_spot_descriptor_454_paired.xml
isatools/resources/sra_templates/experiment_spot_descriptor_454_single.xml
isatools/resources/sra_templates/experiment_spot_descriptor_454_single_barcode.xml
isatools/resources/sra_templates/experiment_spot_descriptor_illumina_paired.xml
isatools/resources/sra_templates/experiment_spot_descriptor_illumina_single.xml
isatools/resources/sra_templates/experiment_spot_descriptor_solid_paired.xml
isatools/resources/sra_templates/experiment_spot_descriptor_solid_single.xml
isatools/resources/sra_templates/project_set.xml
isatools/resources/sra_templates/run.xml
isatools/resources/sra_templates/run_set.xml
isatools/resources/sra_templates/sample.xml
isatools/resources/sra_templates/sample_set.xml
isatools/resources/sra_templates/submission_add.xml
isatools/resources/tab_templates/i_mage_template.txt
isatools/resources/tab_templates/i_template.txt
isatools/tests/__init__.py
isatools/tests/create_sample_assay_plan_odicts.py
isatools/tests/utils.py