LICENCE
README.md
setup.py
ioNERDSS/__init__.py
ioNERDSS.egg-info/PKG-INFO
ioNERDSS.egg-info/SOURCES.txt
ioNERDSS.egg-info/dependency_links.txt
ioNERDSS.egg-info/requires.txt
ioNERDSS.egg-info/top_level.txt
ioNERDSS/functions/__init__.py
ioNERDSS/functions/gui.py
ioNERDSS/functions/acf/__init__.py
ioNERDSS/functions/acf/acf_coord.py
ioNERDSS/functions/database_PDB/PDB_UI.py
ioNERDSS/functions/database_PDB/PDB_object.py
ioNERDSS/functions/database_PDB/__init__.py
ioNERDSS/functions/database_PDB/cg.py
ioNERDSS/functions/database_PDB/dtb_PDB_3D_plot.py
ioNERDSS/functions/database_PDB/dtb_PDB_calc_angle.py
ioNERDSS/functions/database_PDB/dtb_PDB_change_sigma.py
ioNERDSS/functions/database_PDB/dtb_PDB_filter.py
ioNERDSS/functions/database_PDB/dtb_PDB_norm_COM.py
ioNERDSS/functions/database_PDB/dtb_PDB_separate_read.py
ioNERDSS/functions/database_PDB/dtb_PDB_write_PDB.py
ioNERDSS/functions/database_PDB/dtb_PDB_write_input.py
ioNERDSS/functions/database_PDB/gen/__init__.py
ioNERDSS/functions/database_PDB/gen/real_PDB_angles.py
ioNERDSS/functions/database_PDB/gen/real_PDB_calculate_phi.py
ioNERDSS/functions/database_PDB/gen/real_PDB_chain_int.py
ioNERDSS/functions/database_PDB/gen/real_PDB_chain_int_simple.py
ioNERDSS/functions/database_PDB/gen/real_PDB_data_check.py
ioNERDSS/functions/database_PDB/gen/real_PDB_mag.py
ioNERDSS/functions/database_PDB/gen/real_PDB_norm_check.py
ioNERDSS/functions/database_PDB/gen/real_PDB_norm_input.py
ioNERDSS/functions/database_PDB/gen/real_PDB_triangle_correction.py
ioNERDSS/functions/database_PDB/gen/real_PDB_unit.py
ioNERDSS/functions/file_managment/__init__.py
ioNERDSS/functions/file_managment/merge_files.py
ioNERDSS/functions/file_managment/merge_simulation_results.py
ioNERDSS/functions/file_managment/save_multiple_arrays_to_file.py
ioNERDSS/functions/file_managment/save_variable_to_file.py
ioNERDSS/functions/file_managment/save_vars_to_file.py
ioNERDSS/functions/gagReshape/__init__.py
ioNERDSS/functions/gagReshape/calculate_gradient.py
ioNERDSS/functions/gagReshape/calculate_rmsd.py
ioNERDSS/functions/gagReshape/determine_gagTemplate_structure.py
ioNERDSS/functions/gagReshape/eliminate_inconsistent_sites.py
ioNERDSS/functions/gagReshape/gag_write_PDB.py
ioNERDSS/functions/gagReshape/reshape_gag.py
ioNERDSS/functions/gagReshape/restart_pdb_to_df.py
ioNERDSS/functions/gagReshape/translate_gags_on_sphere.py
ioNERDSS/functions/gagReshape/xyz_to_sphere_coordinates.py
ioNERDSS/functions/histograms/__init__.py
ioNERDSS/functions/histograms/hist_to_csv.py
ioNERDSS/functions/histograms/hist_to_csv_old.py
ioNERDSS/functions/histograms/hist_to_df.py
ioNERDSS/functions/histograms/line_size_over_time.py
ioNERDSS/functions/histograms/multi_species/__init__.py
ioNERDSS/functions/histograms/multi_species/frac_of_assemble.py
ioNERDSS/functions/histograms/multi_species/list_index_exists.py
ioNERDSS/functions/histograms/multi_species/multi_heatmap_complex_dist.py
ioNERDSS/functions/histograms/multi_species/multi_hist_3D_complex_dist.py
ioNERDSS/functions/histograms/multi_species/multi_hist_complex_count.py
ioNERDSS/functions/histograms/multi_species/multi_hist_obj.py
ioNERDSS/functions/histograms/multi_species/multi_stack_hist_complex_count.py
ioNERDSS/functions/histograms/multi_species/read_multi_hist.py
ioNERDSS/functions/histograms/single_species/__init__.py
ioNERDSS/functions/histograms/single_species/complex_time_3d.py
ioNERDSS/functions/histograms/single_species/hist_complex_count.py
ioNERDSS/functions/histograms/single_species/hist_temp.py
ioNERDSS/functions/histograms/single_species/read_file.py
ioNERDSS/functions/histograms/single_species/single_hist_obj.py
ioNERDSS/functions/locate_pos/__init__.py
ioNERDSS/functions/locate_pos/nerdss_PDB/__init__.py
ioNERDSS/functions/locate_pos/nerdss_PDB/calculate_distance.py
ioNERDSS/functions/locate_pos/nerdss_PDB/create_bond_list.py
ioNERDSS/functions/locate_pos/nerdss_PDB/create_complex_list.py
ioNERDSS/functions/locate_pos/nerdss_PDB/determine_bind.py
ioNERDSS/functions/locate_pos/nerdss_PDB/filter_complexes.py
ioNERDSS/functions/locate_pos/nerdss_PDB/locate_pos_no_restart.py
ioNERDSS/functions/locate_pos/nerdss_PDB/read_PDB.py
ioNERDSS/functions/locate_pos/nerdss_PDB/read_inp.py
ioNERDSS/functions/locate_pos/nerdss_PDB/write_new_PDB.py
ioNERDSS/functions/locate_pos/restart/__init__.py
ioNERDSS/functions/locate_pos/restart/find_complexes.py
ioNERDSS/functions/locate_pos/restart/locate_pos_restart.py
ioNERDSS/functions/locate_pos/restart/read_pdb.py
ioNERDSS/functions/locate_pos/restart/read_restart.py
ioNERDSS/functions/locate_pos/restart/single_locate_position_restart.py
ioNERDSS/functions/locate_pos/restart/write_pdb.py
ioNERDSS/functions/nerdssGui/__init__.py
ioNERDSS/functions/nerdssGui/nerdss.py
ioNERDSS/functions/nerdssGui/gen/__init__.py
ioNERDSS/functions/nerdssGui/gen/advanced_options_parse_pdb.py
ioNERDSS/functions/nerdssGui/gen/mainwindow.py
ioNERDSS/functions/nerdssGui/gen/mplwidget.py
ioNERDSS/functions/nerdssGui/gen/nerdss_install.py
ioNERDSS/functions/nerdssGui/gen/pdb_movie_player.py
ioNERDSS/functions/nerdssGui/gen/plot_complex.py
ioNERDSS/functions/nerdssGui/gen/plot_copy_num.py
ioNERDSS/functions/pdb/__init__.py
ioNERDSS/functions/pdb/plot_proteins.py
ioNERDSS/functions/platonic_solids/__init__.py
ioNERDSS/functions/platonic_solids/cube/__init__.py
ioNERDSS/functions/platonic_solids/cube/cube_face.py
ioNERDSS/functions/platonic_solids/cube/cube_face_COM_coord.py
ioNERDSS/functions/platonic_solids/cube/cube_face_COM_leg_coord.py
ioNERDSS/functions/platonic_solids/cube/cube_face_COM_leg_list_gen.py
ioNERDSS/functions/platonic_solids/cube/cube_face_COM_list_gen.py
ioNERDSS/functions/platonic_solids/cube/cube_face_input_coord.py
ioNERDSS/functions/platonic_solids/cube/cube_face_leg_reduce.py
ioNERDSS/functions/platonic_solids/cube/cube_face_leg_reduce_coord_gen.py
ioNERDSS/functions/platonic_solids/cube/cube_face_vert_coord.py
ioNERDSS/functions/platonic_solids/cube/cube_face_write.py
ioNERDSS/functions/platonic_solids/cube/cube_vert.py
ioNERDSS/functions/platonic_solids/cube/cube_vert_COM_leg.py
ioNERDSS/functions/platonic_solids/cube/cube_vert_COM_leg_gen.py
ioNERDSS/functions/platonic_solids/cube/cube_vert_coord.py
ioNERDSS/functions/platonic_solids/cube/cube_vert_input_coord.py
ioNERDSS/functions/platonic_solids/cube/cube_vert_leg_reduce.py
ioNERDSS/functions/platonic_solids/cube/cube_vert_leg_reduce_coor_gen.py
ioNERDSS/functions/platonic_solids/cube/cube_vert_norm_input.py
ioNERDSS/functions/platonic_solids/cube/cube_vert_write.py
ioNERDSS/functions/platonic_solids/dode/__init__.py
ioNERDSS/functions/platonic_solids/dode/dode_face.py
ioNERDSS/functions/platonic_solids/dode/dode_face_COM_coor.py
ioNERDSS/functions/platonic_solids/dode/dode_face_COM_leg_coor.py
ioNERDSS/functions/platonic_solids/dode/dode_face_COM_leg_list_gen.py
ioNERDSS/functions/platonic_solids/dode/dode_face_COM_list_gen.py
ioNERDSS/functions/platonic_solids/dode/dode_face_dodecahedron_coord.py
ioNERDSS/functions/platonic_solids/dode/dode_face_input_coord.py
ioNERDSS/functions/platonic_solids/dode/dode_face_leg_reduce.py
ioNERDSS/functions/platonic_solids/dode/dode_face_leg_reduce_coor_gen.py
ioNERDSS/functions/platonic_solids/dode/dode_face_write.py
ioNERDSS/functions/platonic_solids/dode/dode_vert.py
ioNERDSS/functions/platonic_solids/dode/dode_vert_COM_leg.py
ioNERDSS/functions/platonic_solids/dode/dode_vert_COM_leg_gen.py
ioNERDSS/functions/platonic_solids/dode/dode_vert_coord.py
ioNERDSS/functions/platonic_solids/dode/dode_vert_input_coord.py
ioNERDSS/functions/platonic_solids/dode/dode_vert_leg_reduce.py
ioNERDSS/functions/platonic_solids/dode/dode_vert_leg_reduce_coor_gen.py
ioNERDSS/functions/platonic_solids/dode/dode_vert_norm_input.py
ioNERDSS/functions/platonic_solids/dode/dode_vert_write.py
ioNERDSS/functions/platonic_solids/gen_platonic/COM_leg_coord.py
ioNERDSS/functions/platonic_solids/gen_platonic/COM_leg_list_gen.py
ioNERDSS/functions/platonic_solids/gen_platonic/__init__.py
ioNERDSS/functions/platonic_solids/gen_platonic/angle_cal.py
ioNERDSS/functions/platonic_solids/gen_platonic/distance.py
ioNERDSS/functions/platonic_solids/gen_platonic/face_COM_coord.py
ioNERDSS/functions/platonic_solids/gen_platonic/mid_pt.py
ioNERDSS/functions/platonic_solids/gen_platonic/vert_coord.py
ioNERDSS/functions/platonic_solids/icos/__init__.py
ioNERDSS/functions/platonic_solids/icos/icos_face.py
ioNERDSS/functions/platonic_solids/icos/icos_face_COM_coord.py
ioNERDSS/functions/platonic_solids/icos/icos_face_COM_leg_coord.py
ioNERDSS/functions/platonic_solids/icos/icos_face_COM_list_gen.py
ioNERDSS/functions/platonic_solids/icos/icos_face_input_coord.py
ioNERDSS/functions/platonic_solids/icos/icos_face_leg_reduce.py
ioNERDSS/functions/platonic_solids/icos/icos_face_leg_reduce_coord_gen.py
ioNERDSS/functions/platonic_solids/icos/icos_face_vert_coord.py
ioNERDSS/functions/platonic_solids/icos/icos_face_write.py
ioNERDSS/functions/platonic_solids/icos/icos_vert.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_COM_leg.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_COM_leg_gen.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_center_coor.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_check_dis.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_coord.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_input_coord.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_leg_reduce.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_leg_reduce_coor_gen.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_norm_input.py
ioNERDSS/functions/platonic_solids/icos/icos_vert_write.py
ioNERDSS/functions/platonic_solids/octa/__init__.py
ioNERDSS/functions/platonic_solids/octa/octa_face.py
ioNERDSS/functions/platonic_solids/octa/octa_face_COM_coord.py
ioNERDSS/functions/platonic_solids/octa/octa_face_COM_leg_coord.py
ioNERDSS/functions/platonic_solids/octa/octa_face_COM_leg_list_gen.py
ioNERDSS/functions/platonic_solids/octa/octa_face_COM_list_gen.py
ioNERDSS/functions/platonic_solids/octa/octa_face_input_coord.py
ioNERDSS/functions/platonic_solids/octa/octa_face_leg_reduce.py
ioNERDSS/functions/platonic_solids/octa/octa_face_leg_reduce_coord_gen.py
ioNERDSS/functions/platonic_solids/octa/octa_face_vert_coord.py
ioNERDSS/functions/platonic_solids/octa/octa_face_write.py
ioNERDSS/functions/platonic_solids/octa/octa_vert.py
ioNERDSS/functions/platonic_solids/octa/octa_vert_COM_leg.py
ioNERDSS/functions/platonic_solids/octa/octa_vert_COM_leg_gen.py
ioNERDSS/functions/platonic_solids/octa/octa_vert_coord.py
ioNERDSS/functions/platonic_solids/octa/octa_vert_input_coord.py
ioNERDSS/functions/platonic_solids/octa/octa_vert_leg_reduce.py
ioNERDSS/functions/platonic_solids/octa/octa_vert_leg_reduce_coor_gen.py
ioNERDSS/functions/platonic_solids/octa/octa_vert_write.py
ioNERDSS/functions/platonic_solids/tetr/__init__.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_COM_coord.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_COM_leg_coord.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_COM_leg_list_gen.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_COM_list_gen.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_coord.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_input_coord.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_leg_reduce.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_leg_reduce_coord_gen.py
ioNERDSS/functions/platonic_solids/tetr/tetr_face_write.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert_COM_leg.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert_COM_leg_gen.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert_coord.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert_input_coord.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert_leg_reduce.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert_leg_reduce_coor_gen.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert_norm_input.py
ioNERDSS/functions/platonic_solids/tetr/tetr_vert_write.py
ioNERDSS/functions/sphere_reg/__init__.py
ioNERDSS/functions/sphere_reg/fitSphere.py
ioNERDSS/functions/sphere_reg/single_restart_to_df.py
ioNERDSS/functions/sphere_reg/sphere_regularization_index.py
ioNERDSS/functions/time_dependent/__init__.py
ioNERDSS/functions/time_dependent/get_time_dependence.py
ioNERDSS/functions/transition_matrix/__init__.py
ioNERDSS/functions/transition_matrix/associate_prob_asymmetric.py
ioNERDSS/functions/transition_matrix/associate_prob_symmetric.py
ioNERDSS/functions/transition_matrix/complex_lifetime.py
ioNERDSS/functions/transition_matrix/dissociate_prob_asymmetric.py
ioNERDSS/functions/transition_matrix/dissociate_prob_symmetric.py
ioNERDSS/functions/transition_matrix/free_energy.py
ioNERDSS/functions/transition_matrix/growth_prob.py
ioNERDSS/functions/transition_matrix/read_cluster_lifetime.py
ioNERDSS/functions/transition_matrix/read_transition_matrix.py
ioNERDSS/functions/xyz/__init__.py
ioNERDSS/functions/xyz/traj_track.py
ioNERDSS/functions/xyz/xyz_to_csv.py
ioNERDSS/functions/xyz/xyz_to_df.py