README.md
setup.py
bin/inStrain
inStrain/GeneProfile.py
inStrain/SNVprofile.py
inStrain/__init__.py
inStrain/_version.py
inStrain/argumentParser.py
inStrain/controller.py
inStrain/deprecated.py
inStrain/deprecated_gene_statistics.py
inStrain/filter_reads.py
inStrain/genomeUtilities.py
inStrain/linkage.py
inStrain/plottingUtilities.py
inStrain/profileUtilities.py
inStrain/quickProfile.py
inStrain/readComparer.py
inStrain.egg-info/PKG-INFO
inStrain.egg-info/SOURCES.txt
inStrain.egg-info/dependency_links.txt
inStrain.egg-info/not-zip-safe
inStrain.egg-info/requires.txt
inStrain.egg-info/top_level.txt
inStrain/helper_files/NullModel.txt
test/test_suite.py