requests>=2.28.0
beautifulsoup4>=4.11.0
habanero>=1.2.0
pandas>=2.2.0
pubmed-parser>=0.5.0
biopython>=1.84
pony>=0.7.17
llama-index>=0.10.0
dashscope>=1.14.0
pydantic>=2.0.0
llama-index-llms-dashscope>=0.1.0
markdown>=3.5.0
lxml>=4.9.0
nltk>=3.8.0
spacy>=3.7.0
python-dotenv>=1.0.0
pyyaml>=6.0.0
aiohttp>=3.8.0
asyncio-throttle>=1.0.0
aiofiles>=23.0.0
pypdfium2>=4.0.0
feedparser>=6.0.0
python-dateutil>=2.8.0
click>=8.0.0
langchain>=0.1.0
langchain-core>=0.1.0

[dev]
pytest>=7.0
pytest-cov>=3.0
black>=22.0
isort>=5.0
ruff>=0.1.0
mypy>=1.0
types-requests
types-beautifulsoup4
types-PyYAML
