requests>=2.28.0
beautifulsoup4>=4.11.0
habanero>=1.2.0 
pandas>=2.2.0
pubmed-parser>=0.5.0
biopython>=1.84

# MD_LLM_Filter dependencies
llama-index>=0.10.0
dashscope>=1.14.0
pydantic>=2.0.0
llama-index-llms-dashscope>=0.1.0
markdown>=3.5.0
lxml>=4.9.0
nltk>=3.8.0
spacy>=3.7.0
python-dotenv>=1.0.0
pyyaml>=6.0.0
aiohttp>=3.8.0
asyncio-throttle>=1.0.0
aiofiles>=23.0.0

# PDF processing dependencies
pypdfium2>=4.0.0